Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog UreR - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 10 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1 6 1
Acidovorax sp. JS42
Comamonas testosteroni KF-1 3 2
Delftia acidovorans SPH-1 8 3
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110
Verminephrobacter eiseniae EF01-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ureR
*
Acidovorax avenae subsp. citrulli AAC00-1

Site:
position = -38
score = 5.27591
sequence = ACTGGTCTGACCTGT

Gene: Aave_0212: Transcriptional regulator, GntR family
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
*
Delftia acidovorans SPH-1

Site:
position = -45
score = 5.1681
sequence = CGTGGTCTGACCAGT

Gene: Daci_0231: Transcriptional regulator, GntR family
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Transcriptional regulator, GntR family
ureA
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_0211: Amino acid ABC transporter, periplasmic substrate-binding protein
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1

Gene: Daci_0230: Amino acid ABC transporter, periplasmic substrate-binding protein
 
Leptothrix cholodnii SP-6

Gene: Lcho_3211: Amino acid ABC transporter, periplasmic substrate-binding protein
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_4065: Amino acid ABC transporter, periplasmic substrate-binding protein
 
Polaromonas sp. JS666

Gene: Bpro_1501: Amino acid ABC transporter, periplasmic substrate-binding protein
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0161: Amino acid ABC transporter, periplasmic substrate-binding protein
 
Variovorax paradoxus S110

Gene: Vapar_3667: Amino acid ABC transporter, periplasmic substrate-binding protein
 
Verminephrobacter eiseniae EF01-2
Amino acid ABC transporter, periplasmic substrate-binding protein
ureB
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_0210: Amino acid ABC transporter, permease protein
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1

Gene: Daci_0229: Amino acid ABC transporter, permease protein
 
Leptothrix cholodnii SP-6

Gene: Lcho_3210: Amino acid ABC transporter, permease protein
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_4064: Amino acid ABC transporter, permease protein
 2
Polaromonas sp. JS666

Gene: Bpro_3473: Amino acid ABC transporter, permease protein

Gene: Bpro_1502: Amino acid ABC transporter, permease protein
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0162: Amino acid ABC transporter, permease protein
 
Variovorax paradoxus S110

Gene: Vapar_3668: Amino acid ABC transporter, permease protein
 
Verminephrobacter eiseniae EF01-2
Amino acid ABC transporter, permease protein
ureC
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_0209: Amino acid ABC transporter, permease protein
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1

Gene: Daci_0228: Amino acid ABC transporter, permease protein
 
Leptothrix cholodnii SP-6

Gene: Lcho_3209: Amino acid ABC transporter, permease protein
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_4063: Amino acid ABC transporter, permease protein
 2
Polaromonas sp. JS666

Gene: Bpro_3474: Amino acid ABC transporter, permease protein

Gene: Bpro_1503: Amino acid ABC transporter, permease protein
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0163: Amino acid ABC transporter, permease protein
 
Variovorax paradoxus S110

Gene: Vapar_3669: Amino acid ABC transporter, permease protein
 
Verminephrobacter eiseniae EF01-2
Amino acid ABC transporter, permease protein
ureD
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_0208: Amino acid ABC transporter, ATP-binding protein
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1

Gene: Daci_0227: Amino acid ABC transporter, ATP-binding protein
 
Leptothrix cholodnii SP-6

Gene: Lcho_3208: Amino acid ABC transporter, ATP-binding protein
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_4062: Amino acid ABC transporter, ATP-binding protein
 2
Polaromonas sp. JS666

Gene: Bpro_1504: Amino acid ABC transporter, ATP-binding protein

Gene: Bpro_3475: Amino acid ABC transporter, ATP-binding protein
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0164: Amino acid ABC transporter, ATP-binding protein
 
Variovorax paradoxus S110

Gene: Vapar_3670: Amino acid ABC transporter, ATP-binding protein
 
Verminephrobacter eiseniae EF01-2
Amino acid ABC transporter, ATP-binding protein
ureH
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_0207: Ureidoglycolate hydrolase (EC 3.5.3.19)
 
Acidovorax sp. JS42
*
Comamonas testosteroni KF-1

Site:
position = -163
score = 5.32508
sequence = ACTGGTATTACCGGT

Site:
position = -41
score = 5.55666
sequence = ACTGGTATTACCAGT

Gene: CtesDRAFT_0602: Ureidoglycolate hydrolase (EC 3.5.3.19)
*
Delftia acidovorans SPH-1

Site:
position = -194
score = 5.49969
sequence = ACTGGTATGACCGGT

Site:
position = -47
score = 5.55666
sequence = ACTGGTAATACCAGT

Gene: Daci_5077: Ureidoglycolate hydrolase (EC 3.5.3.19)
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_0386: Ureidoglycolate hydrolase (EC 3.5.3.19)
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0846: Ureidoglycolate hydrolase (EC 3.5.3.19)
 
Verminephrobacter eiseniae EF01-2
Ureidoglycolate hydrolase (EC 3.5.3.19)
 
CRON 2.
ureT
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
*
Comamonas testosteroni KF-1

Site:
position = -167
score = 5.55666
sequence = ACTGGTAATACCAGT

Site:
position = -45
score = 5.32508
sequence = ACCGGTAATACCAGT

Gene: CtesDRAFT_0603: major facilitator superfamily transporter
*
Delftia acidovorans SPH-1

Site:
position = -94
score = 5.55666
sequence = ACTGGTATTACCAGT

Site:
position = 53
score = 5.49969
sequence = ACCGGTCATACCAGT

Gene: Daci_5076: major facilitator superfamily transporter
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
major facilitator superfamily transporter
ureR2
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_0604: Transcriptional regulator, GntR family
 
Delftia acidovorans SPH-1

Gene: Daci_5075: Transcriptional regulator, GntR family
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Transcriptional regulator, GntR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD