Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog IolR - Nocardiaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Inositol utilization
Effector:
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 21 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Nocardia farcinica IFM 10152
Rhodococcus erythropolis PR4 10 3
Rhodococcus opacus B4 17 6
Rhodococcus sp. RHA1 17 6
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
iolR
 
Nocardia farcinica IFM 10152
*
Rhodococcus erythropolis PR4

Site:
position = -134
score = 3.5459
sequence = TGCTTGTCAAGACTGACT

Site:
position = -35
score = 5.15013
sequence = AGTTTGTCTGGACATTAT

Gene: RER_20220: Inositol utilization transcriptional regulator, GntR family
*
Rhodococcus opacus B4

Site:
position = -123
score = 3.3204
sequence = CTCCTGTCAAGACTTTGT

Site:
position = -112
score = 5.24232
sequence = ACTTTGTCCTGACATTAT

Gene: ROP_10650: Inositol utilization transcriptional regulator, GntR family
*
Rhodococcus sp. RHA1

Site:
position = -122
score = 3.3204
sequence = CTCCTGTCAAGACTTTGT

Site:
position = -111
score = 5.24232
sequence = ACTTTGTCCTGACATTAT

Gene: RHA1_ro01349: Inositol utilization transcriptional regulator, GntR family
Inositol utilization transcriptional regulator, GntR family
iolG3
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4

Gene: RER_20230: Myo-inositol 2-dehydrogenase (EC 1.1.1.18)
*
Rhodococcus opacus B4

Site:
position = -89
score = 5.0002
sequence = ACTTTGTCCGCACAAACG

Gene: ROP_36840: Myo-inositol 2-dehydrogenase (EC 1.1.1.18)
*
Rhodococcus sp. RHA1

Site:
position = -89
score = 4.94147
sequence = ACTTTGTCAGCACAAACG

Gene: RHA1_ro03822: Myo-inositol 2-dehydrogenase (EC 1.1.1.18)
Myo-inositol 2-dehydrogenase (EC 1.1.1.18)
iolP
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4

Gene: RER_20240: major facilitator family sugar permease
 
Rhodococcus opacus B4

Gene: ROP_10640: major facilitator family sugar permease
 
Rhodococcus sp. RHA1

Gene: RHA1_ro01348: major facilitator family sugar permease
major facilitator family sugar permease
 
CRON 2.
iolTA
 
Nocardia farcinica IFM 10152
*
Rhodococcus erythropolis PR4

Site:
position = -112
score = 4.99751
sequence = CTAATGTCAGAACAAACT

Gene: RER_20340: Inositol ABC transport system sugar-binding protein
*
Rhodococcus opacus B4

Site:
position = -104
score = 5.08689
sequence = CTAATGTCCAGACAAACT

Gene: ROP_10630: Inositol ABC transport system sugar-binding protein
*
Rhodococcus sp. RHA1

Site:
position = -105
score = 5.08689
sequence = CTAATGTCCAGACAAACT

Gene: RHA1_ro01347: Inositol ABC transport system sugar-binding protein
Inositol ABC transport system sugar-binding protein
iolTB
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4

Gene: RER_20350: Inositol ABC transport system permease protein
 
Rhodococcus opacus B4

Gene: ROP_10620: Inositol ABC transport system permease protein
 
Rhodococcus sp. RHA1

Gene: RHA1_ro01346: Inositol ABC transport system permease protein
Inositol ABC transport system permease protein
iolTC
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4

Gene: RER_20360: Inositol ABC transport system ATP-binding protein
 
Rhodococcus opacus B4

Gene: ROP_10610: Inositol ABC transport system ATP-binding protein
 
Rhodococcus sp. RHA1

Gene: RHA1_ro01345: Inositol ABC transport system ATP-binding protein
Inositol ABC transport system ATP-binding protein
 
CRON 3.
oxiA
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4
*
Rhodococcus opacus B4

Site:
position = -26
score = 4.29341
sequence = CGAATGTCTTAACATATA

Gene: ROP_03440: putative myo-inositol 2-dehydrogenase
*
Rhodococcus sp. RHA1

Site:
position = -26
score = 4.29341
sequence = CGAATGTCTTAACATATA

Gene: RHA1_ro00218: putative myo-inositol 2-dehydrogenase
putative myo-inositol 2-dehydrogenase
 
CRON 4.
iolT
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4
*2
Rhodococcus opacus B4

Site:
position = -37
score = 4.93914
sequence = GCTTTGTCCGGACATAAA

Gene: ROP_37590: Myo-inositol transporter, MFS family

Gene: ROP_05270: Myo-inositol transporter, MFS family
*
Rhodococcus sp. RHA1

Site:
position = -61
score = 4.65508
sequence = GCTTTGTTCGGACATAAA

Gene: RHA1_ro03889: Myo-inositol transporter, MFS family
Myo-inositol transporter, MFS family
usp
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4
 2
Rhodococcus opacus B4

Gene: ROP_37580: universal stress protein

Gene: ROP_05280: universal stress protein
 
Rhodococcus sp. RHA1

Gene: RHA1_ro03888: universal stress protein
universal stress protein
iolG4
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4
 
Rhodococcus opacus B4

Gene: ROP_37560: possible inositol 2-dehydrogenase
 
Rhodococcus sp. RHA1

Gene: RHA1_ro03887: possible inositol 2-dehydrogenase
possible inositol 2-dehydrogenase
iolG2
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4
 
Rhodococcus opacus B4

Gene: ROP_37550: Myo-inositol 2-dehydrogenase (EC 1.1.1.18)
 
Rhodococcus sp. RHA1

Gene: RHA1_ro03886: Myo-inositol 2-dehydrogenase (EC 1.1.1.18)
Myo-inositol 2-dehydrogenase (EC 1.1.1.18)
 
CRON 5.
iolC
 
Nocardia farcinica IFM 10152
*
Rhodococcus erythropolis PR4

Site:
position = -8
score = 3.5459
sequence = AGTCAGTCTTGACAAGCA

Site:
position = -107
score = 5.15013
sequence = ATAATGTCCAGACAAACT

Gene: RER_20210: 5-keto-2-deoxygluconokinase (EC 2.7.1.92)
*
Rhodococcus opacus B4

Site:
position = -109
score = 5.24232
sequence = ATAATGTCAGGACAAAGT

Site:
position = -98
score = 3.3204
sequence = ACAAAGTCTTGACAGGAG

Gene: ROP_10660: 5-keto-2-deoxygluconokinase (EC 2.7.1.92)
*
Rhodococcus sp. RHA1

Site:
position = -37
score = 5.24232
sequence = ATAATGTCAGGACAAAGT

Site:
position = -26
score = 3.3204
sequence = ACAAAGTCTTGACAGGAG

Gene: RHA1_ro01350: 5-keto-2-deoxygluconokinase (EC 2.7.1.92)
5-keto-2-deoxygluconokinase (EC 2.7.1.92)
iolJ
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4

Gene: RER_20200: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29)
 
Rhodococcus opacus B4

Gene: ROP_10670: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29)
 
Rhodococcus sp. RHA1

Gene: RHA1_ro01351: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29)
5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29)
iolB
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4

Gene: RER_20190: 5-deoxy-glucuronate isomerase (EC 5.3.1.-)
 
Rhodococcus opacus B4

Gene: ROP_10680: 5-deoxy-glucuronate isomerase (EC 5.3.1.-)
 
Rhodococcus sp. RHA1

Gene: RHA1_ro01352: 5-deoxy-glucuronate isomerase (EC 5.3.1.-)
5-deoxy-glucuronate isomerase (EC 5.3.1.-)
iolD
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4

Gene: RER_20180: Epi-inositol hydrolase (EC 3.7.1.-)
 
Rhodococcus opacus B4

Gene: ROP_10690: Epi-inositol hydrolase (EC 3.7.1.-)
 
Rhodococcus sp. RHA1

Gene: RHA1_ro01353: Epi-inositol hydrolase (EC 3.7.1.-)
Epi-inositol hydrolase (EC 3.7.1.-)
iolE
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4

Gene: RER_20170: Inosose dehydratase (EC 4.2.1.44)
 
Rhodococcus opacus B4

Gene: ROP_10700: Inosose dehydratase (EC 4.2.1.44)
 
Rhodococcus sp. RHA1

Gene: RHA1_ro01354: Inosose dehydratase (EC 4.2.1.44)
Inosose dehydratase (EC 4.2.1.44)
iolG
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4

Gene: RER_20160: Myo-inositol 2-dehydrogenase (EC 1.1.1.18)
 
Rhodococcus opacus B4

Gene: ROP_10710: Myo-inositol 2-dehydrogenase (EC 1.1.1.18)
 
Rhodococcus sp. RHA1

Gene: RHA1_ro01355: Myo-inositol 2-dehydrogenase (EC 1.1.1.18)
Myo-inositol 2-dehydrogenase (EC 1.1.1.18)
iolH
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4

Gene: RER_20150: putative sugar-phosphate epimerase/isomerase IolH
 
Rhodococcus opacus B4

Gene: ROP_10720: putative sugar-phosphate epimerase/isomerase IolH
 
Rhodococcus sp. RHA1

Gene: RHA1_ro01356: putative sugar-phosphate epimerase/isomerase IolH
putative sugar-phosphate epimerase/isomerase IolH
iolA
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4

Gene: RER_20140: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
 
Rhodococcus opacus B4

Gene: ROP_10730: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
 
Rhodococcus sp. RHA1

Gene: RHA1_ro01357: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD