Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PhnR2 - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Phosphonoacetate utilization; Phosphonate utilization; 2-aminoethylphosphonate utilization
Effector: 2-aminoethylphosphonate
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666 11 4
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110
Verminephrobacter eiseniae EF01-2 5 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
phnR2
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
*2
Polaromonas sp. JS666

Site:
position = -68
score = 5.22113
sequence = ATTGTTGACAAT

Gene: Bpro_3219: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family

Site:
position = -30
score = 4.76136
sequence = ATTGTTGACATT

Gene: Bpro_4693: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
*
Verminephrobacter eiseniae EF01-2

Site:
position = 6
score = 4.98385
sequence = ACTGTTGACAAT

Gene: Veis_1095: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family
2-aminoethylphosphonate uptake and metabolism regulator, GntR family
phnA
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 2
Polaromonas sp. JS666

Gene: Bpro_3220: Phosphonoacetate hydrolase (EC 3.11.1.2)

Gene: Bpro_4692: Phosphonoacetate hydrolase (EC 3.11.1.2)
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1096: Phosphonoacetate hydrolase (EC 3.11.1.2)
Phosphonoacetate hydrolase (EC 3.11.1.2)
gap
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 2
Polaromonas sp. JS666

Gene: Bpro_4691: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase

Gene: Bpro_3221: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1097: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
Bpro_3222
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_3222: Alanine dehydrogenase (EC 1.4.1.1)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_4054: Alanine dehydrogenase (EC 1.4.1.1)
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Alanine dehydrogenase (EC 1.4.1.1)
 
CRON 2.
phnS
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
*
Polaromonas sp. JS666

Site:
position = -161
score = 4.76136
sequence = AATGTCAACAAT

Gene: Bpro_4694: 2-aminoethylphosphonate ABC transport system, periplasmic component
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
*
Verminephrobacter eiseniae EF01-2

Site:
position = -170
score = 4.74657
sequence = ACTGTTGACAGT

Gene: Veis_0970: 2-aminoethylphosphonate ABC transport system, periplasmic component
2-aminoethylphosphonate ABC transport system, periplasmic component
phnT
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
*
Polaromonas sp. JS666

Site:
position = -148
score = 5.22113
sequence = ATTGTCAACAAT

Gene: Bpro_3218: 2-aminoethylphosphonate ABC transporter, ATP-binding protein
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0969: 2-aminoethylphosphonate ABC transporter, ATP-binding protein
2-aminoethylphosphonate ABC transporter, ATP-binding protein
phnU
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_3217: 2-aminoethylphosphonate ABC transporter permease component
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0968: 2-aminoethylphosphonate ABC transporter permease component
2-aminoethylphosphonate ABC transporter permease component
phnW
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_3216: 2-aminoethylphosphonate--pyruvate aminotransferase (EC 2.6.1.37)
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0967: 2-aminoethylphosphonate--pyruvate aminotransferase (EC 2.6.1.37)
2-aminoethylphosphonate--pyruvate aminotransferase (EC 2.6.1.37)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD