Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog BAV2585 - Alcaligenaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Nitrogen metabolism
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 5 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bordetella avium 197N 7 2
Bordetella bronchiseptica RB50
Bordetella petrii DSM 12804 9 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
urtA
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
*
Bordetella petrii DSM 12804

Site:
position = -442
score = 5.22932
sequence = GCTTGTATACAAGT

Gene: Bpet0295: Urea ABC transporter, urea binding protein UrtA
Urea ABC transporter, urea binding protein UrtA
urtB
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804

Gene: Bpet0296: Urea ABC transporter, permease protein UrtB
Urea ABC transporter, permease protein UrtB
urtC
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804

Gene: Bpet0297: Urea ABC transporter permease UrtC
Urea ABC transporter permease UrtC
urtD
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804

Gene: Bpet0298: Urea ABC transporter ATP-binding protein UrtD
Urea ABC transporter ATP-binding protein UrtD
urtE
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804

Gene: Bpet0299: Urea ABC transporter ATP-binding protein UrtE
Urea ABC transporter ATP-binding protein UrtE
 
CRON 2.
BAV0996
 
Bordetella avium 197N

Gene: BAV0996: Amidase
 
Bordetella bronchiseptica RB50
*
Bordetella petrii DSM 12804

Site:
position = -153
score = 4.698
sequence = GCTGGTGTACAAGT

Gene: Bpet0288: Amidase
Amidase
 
CRON 3.
BAV2580
*
Bordetella avium 197N

Site:
position = -49
score = 4.07818
sequence = ATCGGTATACAAGC

Gene: BAV2580: ABC transporter substrate binding protein, periplasmic component
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804
ABC transporter substrate binding protein, periplasmic component
BAV2581
 
Bordetella avium 197N

Gene: BAV2581: ABC transporter, permease protein
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804
ABC transporter, permease protein
BAV2582
 
Bordetella avium 197N

Gene: BAV2582: ABC transporter ATP-binding protein
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804
ABC transporter ATP-binding protein
BAV2583
 
Bordetella avium 197N

Gene: BAV2583: hypothetical protein
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804
hypothetical protein
gatA
 
Bordetella avium 197N

Gene: BAV2584: amidase AtzE family
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804
amidase AtzE family
BAV2585
 
Bordetella avium 197N

Gene: BAV2585: Transcriptional regulator, GntR-family
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804

Gene: Bpet0292: Transcriptional regulator, GntR-family
Transcriptional regulator, GntR-family
ucaB
*
Bordetella avium 197N

Site:
position = -26
score = 4.05367
sequence = ACATGTATACCACT

Gene: BAV0804: Allophanate hydrolase (EC 3.5.1.54)
 
Bordetella bronchiseptica RB50
*
Bordetella petrii DSM 12804

Site:
position = -27
score = 5.22932
sequence = ACTTGTATACAAGC

Gene: Bpet0294: Allophanate hydrolase (EC 3.5.1.54)
Allophanate hydrolase (EC 3.5.1.54)
ucaA
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804

Gene: Bpet0293: Urea carboxylase (EC 6.3.4.6)
Urea carboxylase (EC 6.3.4.6)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD