Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Daci_3836 - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1 2 1
Delftia acidovorans SPH-1 1 1
Leptothrix cholodnii SP-6 12 1
Methylibium petroleiphilum PM1 2 2
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110 10 1
Verminephrobacter eiseniae EF01-2 10 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
uahA
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
*
Comamonas testosteroni KF-1

Site:
position = -25
score = 4.25126
sequence = TCTTGTATACATTT

Gene: CtesDRAFT_2681: Allophanate hydrolase (EC 3.5.1.54)
 
Delftia acidovorans SPH-1
*
Leptothrix cholodnii SP-6

Site:
position = 13
score = 4.74733
sequence = TGTTGTATACCAGT

Gene: Lcho_3031: Allophanate hydrolase (EC 3.5.1.54)
*
Methylibium petroleiphilum PM1

Site:
position = -33
score = 5.10422
sequence = TCTGGTACACAAGA

Gene: Mpe_A0773: Allophanate hydrolase (EC 3.5.1.54)
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
*
Variovorax paradoxus S110

Site:
position = -25
score = 5.02311
sequence = ACTTGTACACAAGT

Gene: Vapar_0265: Allophanate hydrolase (EC 3.5.1.54)
*
Verminephrobacter eiseniae EF01-2

Site:
position = -47
score = 4.76439
sequence = GCTGGGATACAAGA

Gene: Veis_0832: Allophanate hydrolase (EC 3.5.1.54)
Allophanate hydrolase (EC 3.5.1.54)
Lcho_3030
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6

Gene: Lcho_3030: hypothetical protein
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
hypothetical protein
Lcho_3029
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6

Gene: Lcho_3029: hypothetical protein
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
hypothetical protein
gatA
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6

Gene: Lcho_3028: amidase AtzE family
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0772: amidase AtzE family
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
amidase AtzE family
Lcho_3027
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6

Gene: Lcho_3027: putative protein for oxalurate utilization
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0771: putative protein for oxalurate utilization
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
putative protein for oxalurate utilization
Lcho_3026
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6

Gene: Lcho_3026: ABC transporter, periplasmic ligand binding protein, Bmp family
*
Methylibium petroleiphilum PM1

Site:
position = -96
score = 4.82488
sequence = TCTTGTATACCAAT

Gene: Mpe_A0769: ABC transporter, periplasmic ligand binding protein, Bmp family
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0270: ABC transporter, periplasmic ligand binding protein, Bmp family
*
Verminephrobacter eiseniae EF01-2

Site:
position = -76
score = 5.22732
sequence = TCTTGAATACAAGA

Gene: Veis_0836: ABC transporter, periplasmic ligand binding protein, Bmp family
ABC transporter, periplasmic ligand binding protein, Bmp family
Lcho_3025
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6

Gene: Lcho_3025: ABC transporter, permease protein
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0768: ABC transporter, permease protein
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0271: ABC transporter, permease protein
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0837: ABC transporter, permease protein
ABC transporter, permease protein
Lcho_3024
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6

Gene: Lcho_3024: ABC transporter, permease protein
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0767: ABC transporter, permease protein
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0272: ABC transporter, permease protein
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0838: ABC transporter, permease protein
ABC transporter, permease protein
Lcho_3023
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6

Gene: Lcho_3023: Isochorismatase hydrolase (EC 3.3.2.1)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0766: Isochorismatase hydrolase (EC 3.3.2.1)
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0273: Isochorismatase hydrolase (EC 3.3.2.1)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0839: Isochorismatase hydrolase (EC 3.3.2.1)
Isochorismatase hydrolase (EC 3.3.2.1)
Lcho_3022
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6

Gene: Lcho_3022: ABC transporter ATP-binding protein
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0765: ABC transporter ATP-binding protein
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0274: ABC transporter ATP-binding protein
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0840: ABC transporter ATP-binding protein
ABC transporter ATP-binding protein
Lcho_3021
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6

Gene: Lcho_3021: Isochorismatase hydrolase (EC 3.3.2.1)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0764: Isochorismatase hydrolase (EC 3.3.2.1)
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0275: Isochorismatase hydrolase (EC 3.3.2.1)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1649: Isochorismatase hydrolase (EC 3.3.2.1)
Isochorismatase hydrolase (EC 3.3.2.1)
Daci_3836
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_2682: Transcriptional regulator, GntR family
*
Delftia acidovorans SPH-1

Site:
position = -33
score = 5.16093
sequence = ACTTGTGTACAAGA

Gene: Daci_3836: Transcriptional regulator, GntR family
 
Leptothrix cholodnii SP-6

Gene: Lcho_3020: Transcriptional regulator, GntR family
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0770: Transcriptional regulator, GntR family
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0276: Transcriptional regulator, GntR family
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0841: Transcriptional regulator, GntR family
Transcriptional regulator, GntR family
Vapar_0266
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0266: ABC transporter substrate binding protein, periplasmic component
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0833: ABC transporter substrate binding protein, periplasmic component
ABC transporter substrate binding protein, periplasmic component
Vapar_0267
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0267: ABC transporter, permease protein
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0834: ABC transporter, permease protein
ABC transporter, permease protein
Vapar_0268
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0268: ABC transporter ATP-binding protein
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0835: ABC transporter ATP-binding protein
ABC transporter ATP-binding protein
Vapar_0269
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0269: hypothetical protein
 
Verminephrobacter eiseniae EF01-2
hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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