Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog SdaR - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Glucarate utilization; Galactarate utilization
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 1 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236 2 1
Variovorax paradoxus S110
Verminephrobacter eiseniae EF01-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
sdaR
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
*
Rhodoferax ferrireducens DSM 15236

Site:
position = -38
score = 4.74989
sequence = AATTTGTCATGCAGCCT

Gene: Rfer_1641: Predicted regulator of D-glucarate/D-galactarate utilization, GntR family
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Predicted regulator of D-glucarate/D-galactarate utilization, GntR family
COG579
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_2451: 2-hydroxyglutarate dehydrogenase
 
Acidovorax sp. JS42

Gene: Ajs_2136: 2-hydroxyglutarate dehydrogenase
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1

Gene: Daci_3992: 2-hydroxyglutarate dehydrogenase
 
Leptothrix cholodnii SP-6

Gene: Lcho_1916: 2-hydroxyglutarate dehydrogenase
 
Methylibium petroleiphilum PM1

Gene: Mpe_A1030: 2-hydroxyglutarate dehydrogenase
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_2706: 2-hydroxyglutarate dehydrogenase
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_1640: 2-hydroxyglutarate dehydrogenase
 
Variovorax paradoxus S110

Gene: Vapar_2152: 2-hydroxyglutarate dehydrogenase
 
Verminephrobacter eiseniae EF01-2
2-hydroxyglutarate dehydrogenase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD