Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog MOCO_RNA_motif - Desulfuromonadales

Properties
Regulator type: RNA regulatory element
Name: MOCO_RNA_motif
RFAM: RF01055
Regulation mode:
Biological process: Molybdopterin biosynthesis; Tungsten homeostasis; Molybdenum homeostasis
Effector: Molybdenum
Phylum: Proteobacteria/Delta
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Desulfuromonas acetoxidans DSM 684 6 3
Geobacter lovleyi SZ
Geobacter metallireducens GS-15 11 3
Geobacter sp. FRC-32 9 4
Geobacter sp. M21 7 3
Geobacter sulfurreducens PCA 7 1
Geobacter uraniumreducens Rf4 9 3
Pelobacter carbinolicus str. DSM 2380 7 5
Pelobacter propionicus DSM 2379
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
aor2
 
Desulfuromonas acetoxidans DSM 684
 
Geobacter lovleyi SZ
 
Geobacter metallireducens GS-15
 
Geobacter sp. FRC-32
 
Geobacter sp. M21
 
Geobacter sulfurreducens PCA
 
Geobacter uraniumreducens Rf4
*
Pelobacter carbinolicus str. DSM 2380

Site:
position = -151
score = 75.26
sequence = GTACAGAACACGTCT...

Gene: Pcar_2514: Tungsten-containing aldehyde:ferredoxin oxidoreductase (EC 1.2.7.5)
 
Pelobacter propionicus DSM 2379
Tungsten-containing aldehyde:ferredoxin oxidoreductase (EC 1.2.7.5)
 
CRON 2.
aor3
 
Desulfuromonas acetoxidans DSM 684
 
Geobacter lovleyi SZ
 
Geobacter metallireducens GS-15
 
Geobacter sp. FRC-32
 
Geobacter sp. M21
 
Geobacter sulfurreducens PCA
*
Geobacter uraniumreducens Rf4

Site:
position = -155
score = 68.6
sequence = CACACCTGTTTTTCT...

Gene: Gura_3550: Tungsten-containing aldehyde:ferredoxin oxidoreductase (EC 1.2.7.5)
 
Pelobacter carbinolicus str. DSM 2380
 
Pelobacter propionicus DSM 2379
Tungsten-containing aldehyde:ferredoxin oxidoreductase (EC 1.2.7.5)
 
CRON 3.
modA
 
Desulfuromonas acetoxidans DSM 684
 
Geobacter lovleyi SZ
 
Geobacter metallireducens GS-15
 
Geobacter sp. FRC-32
 
Geobacter sp. M21
 
Geobacter sulfurreducens PCA
 
Geobacter uraniumreducens Rf4
*
Pelobacter carbinolicus str. DSM 2380

Site:
position = -157
score = 21.2
sequence = CCTATGTGTTCCTCC...

Gene: Pcar_2782: Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)
 
Pelobacter propionicus DSM 2379
Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)
modB
 
Desulfuromonas acetoxidans DSM 684
 
Geobacter lovleyi SZ
 
Geobacter metallireducens GS-15
 
Geobacter sp. FRC-32
 
Geobacter sp. M21
 
Geobacter sulfurreducens PCA
 
Geobacter uraniumreducens Rf4
 
Pelobacter carbinolicus str. DSM 2380

Gene: Pcar_2783: Molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
 
Pelobacter propionicus DSM 2379
Molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
modC
 
Desulfuromonas acetoxidans DSM 684
 
Geobacter lovleyi SZ
 
Geobacter metallireducens GS-15
 
Geobacter sp. FRC-32
 
Geobacter sp. M21
 
Geobacter sulfurreducens PCA
 
Geobacter uraniumreducens Rf4
 
Pelobacter carbinolicus str. DSM 2380

Gene: Pcar_2784: Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)
 
Pelobacter propionicus DSM 2379
Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)
 
CRON 4.
moaE
 2
Desulfuromonas acetoxidans DSM 684

Gene: Dace_2119: Molybdenum cofactor biosynthesis protein MoaE

Gene: Dace_1761: Molybdenum cofactor biosynthesis protein MoaE
 
Geobacter lovleyi SZ
 
Geobacter metallireducens GS-15
 
Geobacter sp. FRC-32
 
Geobacter sp. M21
*
Geobacter sulfurreducens PCA

Site:
position = -190
score = 71.34
sequence = TATTTTGTTATCTCC...

Gene: GSU2699: Molybdenum cofactor biosynthesis protein MoaE
*
Geobacter uraniumreducens Rf4

Site:
position = -210
score = 71.31
sequence = GAAACTGACGCTCTC...

Gene: Gura_3545: Molybdenum cofactor biosynthesis protein MoaE
 
Pelobacter carbinolicus str. DSM 2380
 
Pelobacter propionicus DSM 2379
Molybdenum cofactor biosynthesis protein MoaE
tupB
*
Desulfuromonas acetoxidans DSM 684

Site:
position = -204
score = 66.24
sequence = AATAGTTACAACTCC...

Gene: Dace_1417: ABC-type tungstate transport system, periplasmic binding protein
 
Geobacter lovleyi SZ
 
Geobacter metallireducens GS-15

Gene: Gmet_1041: ABC-type tungstate transport system, periplasmic binding protein
 
Geobacter sp. FRC-32

Gene: Geob_0274: ABC-type tungstate transport system, periplasmic binding protein
 
Geobacter sp. M21

Gene: GM21_2528: ABC-type tungstate transport system, periplasmic binding protein
 
Geobacter sulfurreducens PCA

Gene: GSU2700: ABC-type tungstate transport system, periplasmic binding protein
 
Geobacter uraniumreducens Rf4

Gene: Gura_3544: ABC-type tungstate transport system, periplasmic binding protein
 
Pelobacter carbinolicus str. DSM 2380

Gene: Pcar_0675: ABC-type tungstate transport system, periplasmic binding protein
 
Pelobacter propionicus DSM 2379
ABC-type tungstate transport system, periplasmic binding protein
tupA
 
Desulfuromonas acetoxidans DSM 684

Gene: Dace_1418: ABC-type tungstate transport system, permease protein
 
Geobacter lovleyi SZ
 
Geobacter metallireducens GS-15

Gene: Gmet_1040: ABC-type tungstate transport system, permease protein
*
Geobacter sp. FRC-32

Site:
position = -274
score = 62.29
sequence = TTAAAAACTAAATCT...

Gene: Geob_1629: ABC-type tungstate transport system, permease protein
 
Geobacter sp. M21

Gene: GM21_2527: ABC-type tungstate transport system, permease protein
 
Geobacter sulfurreducens PCA

Gene: GSU2701: ABC-type tungstate transport system, permease protein
 
Geobacter uraniumreducens Rf4

Gene: Gura_3543: ABC-type tungstate transport system, permease protein
 
Pelobacter carbinolicus str. DSM 2380

Gene: Pcar_0928: ABC-type tungstate transport system, permease protein
 
Pelobacter propionicus DSM 2379
ABC-type tungstate transport system, permease protein
tupC
 
Desulfuromonas acetoxidans DSM 684

Gene: Dace_1419: ABC-type tungstate transport system, ATP-binding protein
 
Geobacter lovleyi SZ
 
Geobacter metallireducens GS-15

Gene: Gmet_1039: ABC-type tungstate transport system, ATP-binding protein
 2
Geobacter sp. FRC-32

Gene: Geob_1628: ABC-type tungstate transport system, ATP-binding protein

Gene: Geob_0275: ABC-type tungstate transport system, ATP-binding protein
 
Geobacter sp. M21

Gene: GM21_2526: ABC-type tungstate transport system, ATP-binding protein
 
Geobacter sulfurreducens PCA

Gene: GSU2702: ABC-type tungstate transport system, ATP-binding protein
 
Geobacter uraniumreducens Rf4

Gene: Gura_3542: ABC-type tungstate transport system, ATP-binding protein
 
Pelobacter carbinolicus str. DSM 2380

Gene: Pcar_0927: ABC-type tungstate transport system, ATP-binding protein
 
Pelobacter propionicus DSM 2379
ABC-type tungstate transport system, ATP-binding protein
moeA
 
Desulfuromonas acetoxidans DSM 684

Gene: Dace_1420: Molybdopterin biosynthesis protein MoeA
 3
Geobacter lovleyi SZ

Gene: Glov_0210: Molybdopterin biosynthesis protein MoeA

Gene: Glov_0893: Molybdopterin biosynthesis protein MoeA

Gene: Glov_3585: Molybdopterin biosynthesis protein MoeA
 3
Geobacter metallireducens GS-15

Gene: Gmet_1038: Molybdopterin biosynthesis protein MoeA

Gene: Gmet_1804: Molybdopterin biosynthesis protein MoeA

Gene: Gmet_0336: Molybdopterin biosynthesis protein MoeA
 
Geobacter sp. FRC-32

Gene: Geob_1627: Molybdopterin biosynthesis protein MoeA
*2
Geobacter sp. M21

Gene: GM21_2072: Molybdopterin biosynthesis protein MoeA

Site:
position = -196
score = 73.82
sequence = TTAAGCAAATAGTCT...

Gene: GM21_1950: Molybdopterin biosynthesis protein MoeA
 
Geobacter sulfurreducens PCA

Gene: GSU2703: Molybdopterin biosynthesis protein MoeA
 3
Geobacter uraniumreducens Rf4

Gene: Gura_0462: Molybdopterin biosynthesis protein MoeA

Gene: Gura_3541: Molybdopterin biosynthesis protein MoeA

Gene: Gura_3393: Molybdopterin biosynthesis protein MoeA
*
Pelobacter carbinolicus str. DSM 2380

Site:
position = -461
score = 73.62
sequence = CAAGAATGCGCCTCC...

Gene: Pcar_0256: Molybdopterin biosynthesis protein MoeA
 
Pelobacter propionicus DSM 2379

Gene: Ppro_0454: Molybdopterin biosynthesis protein MoeA
Molybdopterin biosynthesis protein MoeA
moaC
 2
Desulfuromonas acetoxidans DSM 684

Gene: Dace_2120: Molybdenum cofactor biosynthesis protein MoaC

Gene: Dace_1762: Molybdenum cofactor biosynthesis protein MoaC
 
Geobacter lovleyi SZ
 
Geobacter metallireducens GS-15

Gene: Gmet_1037: Molybdenum cofactor biosynthesis protein MoaC
 
Geobacter sp. FRC-32

Gene: Geob_1626: Molybdenum cofactor biosynthesis protein MoaC
 
Geobacter sp. M21

Gene: GM21_1949: Molybdenum cofactor biosynthesis protein MoaC
 
Geobacter sulfurreducens PCA

Gene: GSU2704: Molybdenum cofactor biosynthesis protein MoaC
 
Geobacter uraniumreducens Rf4

Gene: Gura_3540: Molybdenum cofactor biosynthesis protein MoaC
 
Pelobacter carbinolicus str. DSM 2380
 
Pelobacter propionicus DSM 2379
Molybdenum cofactor biosynthesis protein MoaC
moaB
 2
Desulfuromonas acetoxidans DSM 684

Gene: Dace_2121: Molybdenum cofactor biosynthesis protein MoaB

Gene: Dace_1763: Molybdenum cofactor biosynthesis protein MoaB
 
Geobacter lovleyi SZ
 
Geobacter metallireducens GS-15

Gene: Gmet_1036: Molybdenum cofactor biosynthesis protein MoaB
 
Geobacter sp. FRC-32
 
Geobacter sp. M21

Gene: GM21_1948: Molybdenum cofactor biosynthesis protein MoaB
 
Geobacter sulfurreducens PCA

Gene: GSU2705: Molybdenum cofactor biosynthesis protein MoaB
 
Geobacter uraniumreducens Rf4

Gene: Gura_3539: Molybdenum cofactor biosynthesis protein MoaB
 
Pelobacter carbinolicus str. DSM 2380
 
Pelobacter propionicus DSM 2379
Molybdenum cofactor biosynthesis protein MoaB
tupP
 
Desulfuromonas acetoxidans DSM 684
 
Geobacter lovleyi SZ
*
Geobacter metallireducens GS-15

Site:
position = -242
score = 67.39
sequence = ATACTAGTTTTTTCT...

Gene: Gmet_1042: Predicted molybdate/tungstate porin
*
Geobacter sp. FRC-32

Site:
position = -429
score = 70.28
sequence = GCTCGAACTTTCTCC...

Site:
position = -218
score = 68.7
sequence = GATTCTCAACTCTCC...

Gene: Geob_0273: Predicted molybdate/tungstate porin
 
Geobacter sp. M21
 
Geobacter sulfurreducens PCA
 
Geobacter uraniumreducens Rf4
 
Pelobacter carbinolicus str. DSM 2380
 
Pelobacter propionicus DSM 2379
Predicted molybdate/tungstate porin
aor
*2
Desulfuromonas acetoxidans DSM 684

Site:
position = -157
score = 77.67
sequence = GTACTATCAAGATCT...

Gene: Dace_1415: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5)

Site:
position = -154
score = 62.46
sequence = CCAGCCCTTAAATCT...

Gene: Dace_0663: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5)
 
Geobacter lovleyi SZ
*2
Geobacter metallireducens GS-15

Site:
position = -149
score = 69.43
sequence = AACAACCAACACTCT...

Gene: Gmet_1045: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5)

Site:
position = -467
score = 77.07
sequence = TTTAAAACCGTCTCC...

Gene: Gmet_1802: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5)
*2
Geobacter sp. FRC-32

Site:
position = -148
score = 67.5
sequence = TCATGTATCATCTCC...

Gene: Geob_0269: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5)

Site:
position = -140
score = 70.32
sequence = TGACAAAACAAGTCT...

Gene: Geob_0113: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5)
*3
Geobacter sp. M21

Gene: GM21_2842: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5)

Site:
position = -153
score = 59.11
sequence = GGTTTTTGAATCTCC...

Gene: GM21_2933: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5)

Gene: GM21_1609: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5)
 
Geobacter sulfurreducens PCA
*
Geobacter uraniumreducens Rf4

Site:
position = -149
score = 73.72
sequence = AAACACATCATCTCC...

Gene: Gura_2421: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5)
*3
Pelobacter carbinolicus str. DSM 2380

Gene: Pcar_0254: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5)

Site:
position = -156
score = 75.23
sequence = TGCGCGGCAGTCTCC...

Gene: Pcar_0665: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5)

Site:
position = -156
score = 73.2
sequence = CAATACTACCAATCT...

Gene: Pcar_0456: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5)
 3
Pelobacter propionicus DSM 2379

Gene: Ppro_0465: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5)

Gene: Ppro_0888: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5)

Gene: Ppro_0580: Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5)
Tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5)
COG0437
 
Desulfuromonas acetoxidans DSM 684
 
Geobacter lovleyi SZ
 
Geobacter metallireducens GS-15

Gene: Gmet_1803: Fe-S-cluster-containing hydrogenase components
 
Geobacter sp. FRC-32
 
Geobacter sp. M21

Gene: GM21_1610: Fe-S-cluster-containing hydrogenase components
 
Geobacter sulfurreducens PCA
 
Geobacter uraniumreducens Rf4
 
Pelobacter carbinolicus str. DSM 2380
 
Pelobacter propionicus DSM 2379
Fe-S-cluster-containing hydrogenase components
GM21_1608
 
Desulfuromonas acetoxidans DSM 684
 
Geobacter lovleyi SZ
 
Geobacter metallireducens GS-15
 
Geobacter sp. FRC-32
*
Geobacter sp. M21

Site:
position = -290
score = 72.24
sequence = GAAAAATCAGTCTCC...

Gene: GM21_1608: hypothetical protein
 
Geobacter sulfurreducens PCA
 
Geobacter uraniumreducens Rf4
 
Pelobacter carbinolicus str. DSM 2380
 
Pelobacter propionicus DSM 2379
hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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