Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog GmuR - Listeriaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Glucomannan utilization
Effector:
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 16 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Listeria innocua Clip11262 5 4
Listeria monocytogenes EGD-e 5 4
Listeria seeligeri serovar 1/2b str. SLCC3954 5 4
Listeria welshimeri serovar 6b str. SLCC5334 5 4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
manA
*
Listeria innocua Clip11262

Site:
position = -62
score = 4.76773
sequence = ATTAGTATATACTTTT

Gene: lin2215: Mannose-6-phosphate isomerase (EC 5.3.1.8)
*
Listeria monocytogenes EGD-e

Site:
position = -62
score = 4.76773
sequence = ATTAGTATATACTTTT

Gene: lmo2110: Mannose-6-phosphate isomerase (EC 5.3.1.8)
*
Listeria seeligeri serovar 1/2b str. SLCC3954

Site:
position = -63
score = 4.76773
sequence = ATTAGTATATACTTTT

Gene: lse_2099: Mannose-6-phosphate isomerase (EC 5.3.1.8)
*
Listeria welshimeri serovar 6b str. SLCC5334

Site:
position = -62
score = 4.76773
sequence = ATTAGTATATACTTTT

Gene: lwe2129: Mannose-6-phosphate isomerase (EC 5.3.1.8)
Mannose-6-phosphate isomerase (EC 5.3.1.8)
 
CRON 2.
gmuD
*
Listeria innocua Clip11262

Site:
position = -63
score = 4.77397
sequence = ATAAGTTTATACTTTT

Gene: lin0583: Mannoside-phospho-beta-d-glucosidase
*
Listeria monocytogenes EGD-e

Site:
position = -63
score = 4.77397
sequence = ATAAGTTTATACTTTT

Gene: lmo0574: Mannoside-phospho-beta-d-glucosidase
*
Listeria seeligeri serovar 1/2b str. SLCC3954

Site:
position = -65
score = 4.77397
sequence = ATAAGTTTATACTTTT

Gene: lse_0482: Mannoside-phospho-beta-d-glucosidase
*
Listeria welshimeri serovar 6b str. SLCC5334

Site:
position = -63
score = 4.77397
sequence = ATAAGTTTATACTTTT

Gene: lwe0540: Mannoside-phospho-beta-d-glucosidase
Mannoside-phospho-beta-d-glucosidase
gmuR2
 
Listeria innocua Clip11262

Gene: lin0584: Transcriptional regulator for glucomannan utilization, GntR family
 
Listeria monocytogenes EGD-e

Gene: lmo0575: Transcriptional regulator for glucomannan utilization, GntR family
 
Listeria seeligeri serovar 1/2b str. SLCC3954

Gene: lse_0483: Transcriptional regulator for glucomannan utilization, GntR family
 
Listeria welshimeri serovar 6b str. SLCC5334

Gene: lwe0541: Transcriptional regulator for glucomannan utilization, GntR family
Transcriptional regulator for glucomannan utilization, GntR family
 
CRON 3.
gmuC
*
Listeria innocua Clip11262

Site:
position = -87
score = 5.84316
sequence = AAAAGACTAGACATTT

Gene: lin0900: Glucomannan-related PTS system, IIC component (EC 2.7.1.69)
*
Listeria monocytogenes EGD-e

Site:
position = -89
score = 5.84316
sequence = AAAAGACTAGACATTT

Gene: lmo0901: Glucomannan-related PTS system, IIC component (EC 2.7.1.69)
*
Listeria seeligeri serovar 1/2b str. SLCC3954

Site:
position = -88
score = 5.84316
sequence = AAAAGACTAGACATTT

Gene: lse_0803: Glucomannan-related PTS system, IIC component (EC 2.7.1.69)
*
Listeria welshimeri serovar 6b str. SLCC5334

Site:
position = -87
score = 5.84316
sequence = AAAAGACTAGACATTT

Gene: lwe0886: Glucomannan-related PTS system, IIC component (EC 2.7.1.69)
Glucomannan-related PTS system, IIC component (EC 2.7.1.69)
 
CRON 4.
gmuR1
*
Listeria innocua Clip11262

Site:
position = -42
score = 5.59127
sequence = AAATGGCTAGACATTT

Gene: lin0901: Transcriptional regulator for glucomannan utilization, GntR family
*
Listeria monocytogenes EGD-e

Site:
position = -42
score = 5.59127
sequence = AAATGGCTAGACATTT

Gene: lmo0902: Transcriptional regulator for glucomannan utilization, GntR family
*
Listeria seeligeri serovar 1/2b str. SLCC3954

Site:
position = -42
score = 5.59127
sequence = AAATGGCTAGACATTT

Gene: lse_0804: Transcriptional regulator for glucomannan utilization, GntR family
*
Listeria welshimeri serovar 6b str. SLCC5334

Site:
position = -42
score = 5.59127
sequence = AAATGGCTAGACATTT

Gene: lwe0887: Transcriptional regulator for glucomannan utilization, GntR family
Transcriptional regulator for glucomannan utilization, GntR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD