Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LldR - Micrococcineae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Lactate utilization
Effector: L-lactate
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 25 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Arthrobacter aurescens TC1 2 2
Arthrobacter chlorophenolicus A6
Arthrobacter sp. FB24 2 2
Beutenbergia cavernae DSM 12333
Brachybacterium faecium DSM 4810 2 2
Brevibacterium linens BL2 7 4
Clavibacter michiganensis subsp. michiganensis NCPPB 382
Janibacter sp. HTCC2649
Jonesia denitrificans DSM 20603 1 1
Kocuria rhizophila DC2201 5 2
Kytococcus sedentarius DSM 20547
Leifsonia xyli subsp. xyli str. CTCB07
Renibacterium salmoninarum ATCC 33209 2 2
Tropheryma whipplei str. Twist
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
lldP2
 
Arthrobacter aurescens TC1
 
Arthrobacter chlorophenolicus A6
 
Arthrobacter sp. FB24
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
*
Kocuria rhizophila DC2201

Site:
position = -273
score = 4.28692
sequence = TGTGGCCAGACCAGG

Site:
position = -132
score = 5.60343
sequence = TGTGGTCGGACCACT

Site:
position = -118
score = 5.79586
sequence = TGTGGTCTGACCACT

Gene: KRH_04350: L-lactate permease
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
L-lactate permease
lldR
*
Arthrobacter aurescens TC1

Site:
position = -57
score = 5.96271
sequence = TGTGGTCTAACCACA

Site:
position = -32
score = 5.77028
sequence = TGTGGTTGGACCACA

Gene: AAur_3323: Lactate-responsive regulator LldR in Actinobacteria, GntR family
 
Arthrobacter chlorophenolicus A6
*
Arthrobacter sp. FB24

Site:
position = -24
score = 5.96271
sequence = TGTGGTCTAACCACA

Site:
position = 1
score = 5.77028
sequence = TGTGGTCCAACCACA

Gene: Arth_3342: Lactate-responsive regulator LldR in Actinobacteria, GntR family
 
Beutenbergia cavernae DSM 12333
*
Brachybacterium faecium DSM 4810

Site:
position = -147
score = 6.19742
sequence = TGTGGTCAGACCACA

Gene: Bfae_12010: Lactate-responsive regulator LldR in Actinobacteria, GntR family
*2
Brevibacterium linens BL2

Gene: BlinB01002688: Lactate-responsive regulator LldR in Actinobacteria, GntR family

Site:
position = -119
score = 4.91688
sequence = TGTGGTCAGACCTTA

Gene: BlinB01001218: Lactate-responsive regulator LldR in Actinobacteria, GntR family
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
*
Jonesia denitrificans DSM 20603

Site:
position = -52
score = 5.55324
sequence = TGTGGCCTGACCACA

Gene: Jden_0453: Lactate-responsive regulator LldR in Actinobacteria, GntR family
 2
Kocuria rhizophila DC2201

Gene: KRH_04840: Lactate-responsive regulator LldR in Actinobacteria, GntR family

Gene: KRH_04340: Lactate-responsive regulator LldR in Actinobacteria, GntR family
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
*
Renibacterium salmoninarum ATCC 33209

Site:
position = -36
score = 5.1409
sequence = TGTGGTTGGACCATA

Site:
position = 1
score = 5.55348
sequence = TGTGGTCCTACCACA

Gene: RSal33209_2721: Lactate-responsive regulator LldR in Actinobacteria, GntR family
 
Tropheryma whipplei str. Twist
Lactate-responsive regulator LldR in Actinobacteria, GntR family
 
CRON 2.
lldP
 
Arthrobacter aurescens TC1
 
Arthrobacter chlorophenolicus A6
 
Arthrobacter sp. FB24
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
*
Brevibacterium linens BL2

Site:
position = -42
score = 5.79586
sequence = AGTGGTCTGACCACA

Gene: BlinB01001150: L-lactate permease
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
L-lactate permease
lldD
*
Arthrobacter aurescens TC1

Site:
position = -136
score = 5.77028
sequence = TGTGGTCCAACCACA

Site:
position = -111
score = 5.96271
sequence = TGTGGTTAGACCACA

Gene: AAur_3324: L-lactate dehydrogenase (EC 1.1.2.3)
 
Arthrobacter chlorophenolicus A6

Gene: Achl_3141: L-lactate dehydrogenase (EC 1.1.2.3)
*
Arthrobacter sp. FB24

Site:
position = -101
score = 5.77028
sequence = TGTGGTTGGACCACA

Site:
position = -76
score = 5.96271
sequence = TGTGGTTAGACCACA

Gene: Arth_3343: L-lactate dehydrogenase (EC 1.1.2.3)
 
Beutenbergia cavernae DSM 12333

Gene: Bcav_3293: L-lactate dehydrogenase (EC 1.1.2.3)
*
Brachybacterium faecium DSM 4810

Site:
position = -63
score = 6.19742
sequence = TGTGGTCTGACCACA

Gene: Bfae_12000: L-lactate dehydrogenase (EC 1.1.2.3)
*2
Brevibacterium linens BL2

Gene: BlinB01001149: L-lactate dehydrogenase (EC 1.1.2.3)

Site:
position = 27
score = 4.08837
sequence = TTCGGTCTGCCCAGA

Gene: BlinB01002179: L-lactate dehydrogenase (EC 1.1.2.3)
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201

Gene: KRH_12300: L-lactate dehydrogenase (EC 1.1.2.3)
 
Kytococcus sedentarius DSM 20547

Gene: Ksed_03020: L-lactate dehydrogenase (EC 1.1.2.3)
 
Leifsonia xyli subsp. xyli str. CTCB07
*
Renibacterium salmoninarum ATCC 33209

Site:
position = -24
score = 5.55348
sequence = TGTGGTAGGACCACA

Site:
position = 13
score = 5.1409
sequence = TATGGTCCAACCACA

Gene: RSal33209_2722: L-lactate dehydrogenase (EC 1.1.2.3)
 
Tropheryma whipplei str. Twist
L-lactate dehydrogenase (EC 1.1.2.3)
 
CRON 3.
lldE
 
Arthrobacter aurescens TC1
 
Arthrobacter chlorophenolicus A6

Gene: Achl_3104: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE
 
Arthrobacter sp. FB24
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810

Gene: Bfae_12950: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE
*
Brevibacterium linens BL2

Site:
position = -118
score = 4.91688
sequence = TAAGGTCTGACCACA

Gene: BlinB01001219: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649

Gene: JNB_14078: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE
 
Jonesia denitrificans DSM 20603
*
Kocuria rhizophila DC2201

Site:
position = -223
score = 5.79586
sequence = AGTGGTCAGACCACA

Site:
position = -209
score = 5.60343
sequence = AGTGGTCCGACCACA

Site:
position = -68
score = 4.28692
sequence = CCTGGTCTGGCCACA

Gene: KRH_04360: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE
 
Kytococcus sedentarius DSM 20547

Gene: Ksed_04070: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE
lldF
 
Arthrobacter aurescens TC1
 
Arthrobacter chlorophenolicus A6

Gene: Achl_3103: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
 
Arthrobacter sp. FB24
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810

Gene: Bfae_12940: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
 
Brevibacterium linens BL2

Gene: BlinB01001220: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649

Gene: JNB_14083: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201

Gene: KRH_04370: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
 
Kytococcus sedentarius DSM 20547

Gene: Ksed_04080: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
lldG
 
Arthrobacter aurescens TC1
 
Arthrobacter chlorophenolicus A6

Gene: Achl_3102: L-lactate dehydrogenase, subunit LldG
 
Arthrobacter sp. FB24
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810

Gene: Bfae_12930: L-lactate dehydrogenase, subunit LldG
 
Brevibacterium linens BL2

Gene: BlinB01001221: L-lactate dehydrogenase, subunit LldG
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649

Gene: JNB_14088: L-lactate dehydrogenase, subunit LldG
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201

Gene: KRH_04380: L-lactate dehydrogenase, subunit LldG
 
Kytococcus sedentarius DSM 20547

Gene: Ksed_04090: L-lactate dehydrogenase, subunit LldG
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
L-lactate dehydrogenase, subunit LldG
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
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