Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog BenR - Corynebacteriaceae

Properties
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Benzoate degradation
Effector:
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Corynebacterium amycolatum SK46
Corynebacterium aurimucosum ATCC 700975
Corynebacterium diphtheriae NCTC 13129
Corynebacterium efficiens YS-314 8 3
Corynebacterium glutamicum ATCC 13032 9 3
Corynebacterium jeikeium K411
Corynebacterium kroppenstedtii DSM 44385
Corynebacterium urealyticum DSM 7109
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
benA
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129
*
Corynebacterium efficiens YS-314

Site:
position = -174
score = 5.41977
sequence = CCTAGGTTTTTCCCTAAT

Gene: CE2305: Benzoate 1,2-dioxygenase alpha subunit (EC 1.14.12.10)
*
Corynebacterium glutamicum ATCC 13032

Site:
position = -166
score = 5.48674
sequence = CCTAGGAATTCCCCTAAT

Gene: cg2637: Benzoate 1,2-dioxygenase alpha subunit (EC 1.14.12.10)
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109
Benzoate 1,2-dioxygenase alpha subunit (EC 1.14.12.10)
benB
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium efficiens YS-314

Gene: CE2306: Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10)
 
Corynebacterium glutamicum ATCC 13032

Gene: cg2638: Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10)
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109
Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10)
benC
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium efficiens YS-314

Gene: CE2307: benzoate dioxygenase, ferredoxin reductase component
 
Corynebacterium glutamicum ATCC 13032

Gene: cg2639: benzoate dioxygenase, ferredoxin reductase component
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109
benzoate dioxygenase, ferredoxin reductase component
benD
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium efficiens YS-314

Gene: CE2308: 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25)
 
Corynebacterium glutamicum ATCC 13032

Gene: cg2640: 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25)
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109
1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25)
 
CRON 2.
catA
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129
*
Corynebacterium efficiens YS-314

Site:
position = -117
score = 5.41977
sequence = ATTAGGGAAAAACCTAGG

Gene: CE2304: Protocatechuate 3,4-dioxygenase beta subunit (EC 1.13.11.1)
*
Corynebacterium glutamicum ATCC 13032

Site:
position = -269
score = 5.48674
sequence = ATTAGGGGAATTCCTAGG

Gene: cg2636: Protocatechuate 3,4-dioxygenase beta subunit (EC 1.13.11.1)
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109
Protocatechuate 3,4-dioxygenase beta subunit (EC 1.13.11.1)
catB
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium efficiens YS-314

Gene: CE2303: Muconate cycloisomerase (EC 5.5.1.1)
 
Corynebacterium glutamicum ATCC 13032

Gene: cg2635: Muconate cycloisomerase (EC 5.5.1.1)
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109
Muconate cycloisomerase (EC 5.5.1.1)
catC
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium efficiens YS-314

Gene: CE2302: Muconolactone isomerase (EC 5.3.3.4)
 
Corynebacterium glutamicum ATCC 13032

Gene: cg2634: Muconolactone isomerase (EC 5.3.3.4)
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109
Muconolactone isomerase (EC 5.3.3.4)
 
CRON 3.
benK
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129
*
Corynebacterium efficiens YS-314

Site:
position = -108
score = 5.32195
sequence = TTTAGGGGGTTCCCTAGT

Gene: CE2310: Benzoate transporter, MFS family
*
Corynebacterium glutamicum ATCC 13032

Site:
position = -108
score = 5.47884
sequence = TTTAGGGCTATCCCTAGT

Gene: cg2642: Benzoate transporter, MFS family
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109
Benzoate transporter, MFS family
benE
 
Corynebacterium amycolatum SK46
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium efficiens YS-314

Gene: CE2502: Benzoate transporter
 
Corynebacterium glutamicum ATCC 13032

Gene: cg2643: Benzoate transporter
 
Corynebacterium jeikeium K411
 
Corynebacterium kroppenstedtii DSM 44385
 
Corynebacterium urealyticum DSM 7109
Benzoate transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD