Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Aave_3515 - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 15 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1 6 2
Acidovorax sp. JS42
Comamonas testosteroni KF-1 4 2
Delftia acidovorans SPH-1 10 2
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236 7 2
Variovorax paradoxus S110
Verminephrobacter eiseniae EF01-2 4 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
Daci_5732
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
*
Delftia acidovorans SPH-1

Site:
position = -127
score = 3.29933
sequence = GGATATTGAACATCC

Site:
position = -266
score = 3.37151
sequence = TTTTGTTCAACAAAA

Gene: Daci_5732: Extracellular ligand-binding receptor
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Extracellular ligand-binding receptor
COG3181
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1

Gene: Daci_5733: hypothetical protein
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
hypothetical protein
Daci_5734
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1

Gene: Daci_5734: aromatic amino acid beta-eliminating lyase/threonine aldolase
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
aromatic amino acid beta-eliminating lyase/threonine aldolase
Aave_3515
*
Acidovorax avenae subsp. citrulli AAC00-1

Site:
position = -219
score = 3.55809
sequence = CATTGATGAATCATC

Site:
position = -198
score = 5.27798
sequence = AATTGTTGAACAATT

Gene: Aave_3515: Transcriptional regulator, GntR family
 
Acidovorax sp. JS42
*
Comamonas testosteroni KF-1

Site:
position = -160
score = 5.54644
sequence = AATTGTTGAACAATC

Site:
position = -117
score = 3.22448
sequence = GTTTGCAGAACAAAT

Gene: CtesDRAFT_4488: Transcriptional regulator, GntR family
 
Delftia acidovorans SPH-1

Gene: Daci_5735: Transcriptional regulator, GntR family
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
*
Rhodoferax ferrireducens DSM 15236

Site:
position = -216
score = 4.94196
sequence = TATTGTTGAACAATT

Gene: Rfer_0874: Transcriptional regulator, GntR family
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1313: Transcriptional regulator, GntR family
Transcriptional regulator, GntR family
COG3665
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
*
Verminephrobacter eiseniae EF01-2

Site:
position = -12
score = 5.1113
sequence = GGTTGTTCAACAATG

Gene: Veis_1314: Uncharacterized conserved protein
Uncharacterized conserved protein
 
CRON 2.
COG3819
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
*
Comamonas testosteroni KF-1

Site:
position = -147
score = 5.54644
sequence = GATTGTTCAACAATT

Gene: CtesDRAFT_4489: integral membrane protein
*
Delftia acidovorans SPH-1

Site:
position = -105
score = 3.37151
sequence = TTTTGTTGAACAAAA

Site:
position = -244
score = 3.29933
sequence = GGATGTTCAATATCC

Gene: Daci_5731: integral membrane protein
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
*
Rhodoferax ferrireducens DSM 15236

Site:
position = -72
score = 4.94196
sequence = AATTGTTCAACAATA

Gene: Rfer_0873: integral membrane protein
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
integral membrane protein
COG3817
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4490: integral membrane protein
 
Delftia acidovorans SPH-1

Gene: Daci_5730: integral membrane protein
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0872: integral membrane protein
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
integral membrane protein
pcp
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4491: Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)
 
Delftia acidovorans SPH-1

Gene: Daci_5729: Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_1512: Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0871: Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)
 
Variovorax paradoxus S110

Gene: Vapar_4364: Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)
 
Verminephrobacter eiseniae EF01-2
Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)
COG1540
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_3513: Uncharacterized proteins, homologs of lactam utilization protein B
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4492: Uncharacterized proteins, homologs of lactam utilization protein B
 
Delftia acidovorans SPH-1

Gene: Daci_5728: Uncharacterized proteins, homologs of lactam utilization protein B
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0870: Uncharacterized proteins, homologs of lactam utilization protein B
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Uncharacterized proteins, homologs of lactam utilization protein B
alhAB
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_3511: Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54)
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4493: Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54)
 
Delftia acidovorans SPH-1

Gene: Daci_5727: Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54)
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0869: Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54)
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54)
alhC
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_3510: Urea carboxylase (EC 6.3.4.6)
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4494: Urea carboxylase (EC 6.3.4.6)
 
Delftia acidovorans SPH-1

Gene: Daci_5726: Urea carboxylase (EC 6.3.4.6)
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0868: Urea carboxylase (EC 6.3.4.6)
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Urea carboxylase (EC 6.3.4.6)
COG2814
*
Acidovorax avenae subsp. citrulli AAC00-1

Site:
position = -53
score = 3.55809
sequence = GATGATTCATCAATG

Site:
position = -74
score = 5.27798
sequence = AATTGTTCAACAATT

Gene: Aave_3514: Major facilitator family transporter
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_4743: Major facilitator family transporter
Major facilitator family transporter
COG4336
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_3512: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1

Gene: Daci_4977: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_1776: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_3292: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_4744: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase
hypothetical protein possibly connected to lactam utilization and allophanate hydrolase
 
CRON 3.
Veis_1310
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
*
Verminephrobacter eiseniae EF01-2

Site:
position = -100
score = 5.8149
sequence = GATTGTTCAACAATC

Gene: Veis_1310: extracellular solute-binding protein, family 3
extracellular solute-binding protein, family 3
Veis_1311
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1311: polar amino acid ABC transporter, inner membrane subunit
polar amino acid ABC transporter, inner membrane subunit
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD