Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog AAur_0050 - Micrococcineae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process:
Effector:
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 14 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Arthrobacter aurescens TC1 5 2
Arthrobacter chlorophenolicus A6 5 2
Arthrobacter sp. FB24 7 3
Beutenbergia cavernae DSM 12333
Brachybacterium faecium DSM 4810
Brevibacterium linens BL2 1 1
Clavibacter michiganensis subsp. michiganensis NCPPB 382
Janibacter sp. HTCC2649 5 2
Jonesia denitrificans DSM 20603
Kocuria rhizophila DC2201 4 1
Kytococcus sedentarius DSM 20547 4 1
Leifsonia xyli subsp. xyli str. CTCB07
Renibacterium salmoninarum ATCC 33209
Tropheryma whipplei str. Twist
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG1540
*
Arthrobacter aurescens TC1

Site:
position = -141
score = 5.8149
sequence = GATTGTTGAACAATC

Gene: AAur_0051: Uncharacterized proteins, homologs of lactam utilization protein B
*
Arthrobacter chlorophenolicus A6

Site:
position = -67
score = 5.8149
sequence = GATTGTTGAACAATC

Gene: Achl_0177: Uncharacterized proteins, homologs of lactam utilization protein B
*
Arthrobacter sp. FB24

Site:
position = -66
score = 5.8149
sequence = GATTGTTGAACAATC

Gene: Arth_0093: Uncharacterized proteins, homologs of lactam utilization protein B
 
Beutenbergia cavernae DSM 12333

Gene: Bcav_1377: Uncharacterized proteins, homologs of lactam utilization protein B
 
Brachybacterium faecium DSM 4810

Gene: Bfae_29760: Uncharacterized proteins, homologs of lactam utilization protein B
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649

Gene: JNB_14193: Uncharacterized proteins, homologs of lactam utilization protein B
 
Jonesia denitrificans DSM 20603
*
Kocuria rhizophila DC2201

Site:
position = -67
score = 5.54644
sequence = GATTGTTGAACAATT

Gene: KRH_21120: Uncharacterized proteins, homologs of lactam utilization protein B
 
Kytococcus sedentarius DSM 20547

Gene: Ksed_00400: Uncharacterized proteins, homologs of lactam utilization protein B
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Uncharacterized proteins, homologs of lactam utilization protein B
COG2814
 
Arthrobacter aurescens TC1

Gene: AAur_0052: Major facilitator superfamily transporter
 
Arthrobacter chlorophenolicus A6

Gene: Achl_0176: Major facilitator superfamily transporter
*2
Arthrobacter sp. FB24

Gene: Arth_0094: Major facilitator superfamily transporter

Site:
position = -169
score = 5.77475
sequence = GATTGTTCAACGATC

Site:
position = -186
score = 4.89538
sequence = GATTGTTCAACAGTT

Gene: Arth_3577: Major facilitator superfamily transporter
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382

Gene: CMM_0732: Major facilitator superfamily transporter
*
Janibacter sp. HTCC2649

Site:
position = -75
score = 5.08809
sequence = AATTGCTCAACAATC

Gene: JNB_14188: Major facilitator superfamily transporter
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Major facilitator superfamily transporter
alhB
 
Arthrobacter aurescens TC1

Gene: AAur_0053: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
 
Arthrobacter chlorophenolicus A6
 
Arthrobacter sp. FB24

Gene: Arth_0095: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
 
Beutenbergia cavernae DSM 12333

Gene: Bcav_1379: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382

Gene: CMM_0564: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
 
Janibacter sp. HTCC2649

Gene: JNB_14203: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201

Gene: KRH_21130: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
 
Kytococcus sedentarius DSM 20547

Gene: Ksed_00380: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
alhC
 
Arthrobacter aurescens TC1

Gene: AAur_0054: Urea carboxylase (EC 6.3.4.6)
 
Arthrobacter chlorophenolicus A6

Gene: Achl_0174: Urea carboxylase (EC 6.3.4.6)
 
Arthrobacter sp. FB24

Gene: Arth_0096: Urea carboxylase (EC 6.3.4.6)
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2

Gene: BlinB01003516: Urea carboxylase (EC 6.3.4.6)
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201

Gene: KRH_21140: Urea carboxylase (EC 6.3.4.6)
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Urea carboxylase (EC 6.3.4.6)
COG1914
 
Arthrobacter aurescens TC1
 
Arthrobacter chlorophenolicus A6
 
Arthrobacter sp. FB24
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2

Gene: BlinB01003520: Mn2+ and Fe2+ transporters of the NRAMP family
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201

Gene: KRH_21180: Mn2+ and Fe2+ transporters of the NRAMP family
*
Kytococcus sedentarius DSM 20547

Site:
position = -77
score = 5.8149
sequence = GATTGTTGAACAATC

Gene: Ksed_00410: Mn2+ and Fe2+ transporters of the NRAMP family
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Mn2+ and Fe2+ transporters of the NRAMP family
alhA
 
Arthrobacter aurescens TC1
 
Arthrobacter chlorophenolicus A6
 
Arthrobacter sp. FB24
 
Beutenbergia cavernae DSM 12333

Gene: Bcav_1378: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382

Gene: CMM_0563: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
 
Janibacter sp. HTCC2649

Gene: JNB_14198: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547

Gene: Ksed_00390: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209

Gene: RSal33209_3131: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
 
Tropheryma whipplei str. Twist
Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
alhAB
 
Arthrobacter aurescens TC1

Gene: AAur_0365: Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54)
 
Arthrobacter chlorophenolicus A6

Gene: Achl_0175: Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54)
 
Arthrobacter sp. FB24
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810

Gene: Bfae_29770: Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54)
 
Brevibacterium linens BL2

Gene: BlinB01003517: Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54)
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209

Gene: RSal33209_3130: Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54)
 
Tropheryma whipplei str. Twist
Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54)
AAur_0050
*
Arthrobacter aurescens TC1

Site:
position = -55
score = 5.8149
sequence = GATTGTTCAACAATC

Gene: AAur_0050: Transcriptional regulator, GntR family
*
Arthrobacter chlorophenolicus A6

Site:
position = -55
score = 5.8149
sequence = GATTGTTCAACAATC

Gene: Achl_0178: Transcriptional regulator, GntR family
*
Arthrobacter sp. FB24

Site:
position = -55
score = 5.8149
sequence = GATTGTTCAACAATC

Gene: Arth_0092: Transcriptional regulator, GntR family
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
*
Brevibacterium linens BL2

Site:
position = -96
score = 4.59321
sequence = GATTGTTCAACAAGA

Site:
position = -118
score = 3.88423
sequence = AAGCGTTAGACAATC

Gene: BlinB01001258: Transcriptional regulator, GntR family
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
*
Janibacter sp. HTCC2649

Site:
position = -66
score = 5.08809
sequence = GATTGTTGAGCAATT

Gene: JNB_14183: Transcriptional regulator, GntR family
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201

Gene: KRH_21150: Transcriptional regulator, GntR family
 
Kytococcus sedentarius DSM 20547

Gene: Ksed_00430: Transcriptional regulator, GntR family
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Transcriptional regulator, GntR family
COG4336
 
Arthrobacter aurescens TC1
 
Arthrobacter chlorophenolicus A6
 
Arthrobacter sp. FB24

Gene: Arth_3576: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
 2
Brevibacterium linens BL2

Gene: BlinB01003519: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase

Gene: BlinB01003518: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 2
Kocuria rhizophila DC2201

Gene: KRH_21170: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase

Gene: KRH_21160: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase
 
Kytococcus sedentarius DSM 20547

Gene: Ksed_22470: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
hypothetical protein possibly connected to lactam utilization and allophanate hydrolase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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