Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Arth_3541 - Micrococcineae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process:
Effector:
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 14 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Arthrobacter aurescens TC1 3 2
Arthrobacter chlorophenolicus A6 4 4
Arthrobacter sp. FB24 4 4
Beutenbergia cavernae DSM 12333
Brachybacterium faecium DSM 4810
Brevibacterium linens BL2
Clavibacter michiganensis subsp. michiganensis NCPPB 382 4 4
Janibacter sp. HTCC2649
Jonesia denitrificans DSM 20603
Kocuria rhizophila DC2201
Kytococcus sedentarius DSM 20547
Leifsonia xyli subsp. xyli str. CTCB07
Renibacterium salmoninarum ATCC 33209
Tropheryma whipplei str. Twist
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
Arth_3541
*
Arthrobacter aurescens TC1

Site:
position = -105
score = 5.65772
sequence = CGGGTTGTATACAACCTG

Gene: AAur_0623: Transcriptional regulator, GntR family
*
Arthrobacter chlorophenolicus A6

Site:
position = -19
score = 5.03079
sequence = TCTGTTGTATACATAATG

Gene: Achl_3241: Transcriptional regulator, GntR family
*
Arthrobacter sp. FB24

Site:
position = -19
score = 5.07773
sequence = TCTGTTGTATACATGATG

Gene: Arth_3541: Transcriptional regulator, GntR family
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2
*
Clavibacter michiganensis subsp. michiganensis NCPPB 382

Site:
position = -19
score = 5.04929
sequence = CGTGATGTATACATAGCG

Gene: CMM_0733: Transcriptional regulator, GntR family
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Transcriptional regulator, GntR family
 
CRON 2.
Arth_3540
*
Arthrobacter aurescens TC1

Site:
position = -134
score = 5.65772
sequence = CAGGTTGTATACAACCCG

Gene: AAur_0621: Major facilitator superfamily transporter
*
Arthrobacter chlorophenolicus A6

Site:
position = -49
score = 5.15345
sequence = CGTAATGTATACATTACA

Gene: Achl_3240: Major facilitator superfamily transporter
*
Arthrobacter sp. FB24

Site:
position = -66
score = 4.86413
sequence = CGTAATGTATACATTTAA

Gene: Arth_3540: Major facilitator superfamily transporter
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2
*
Clavibacter michiganensis subsp. michiganensis NCPPB 382

Site:
position = -85
score = 5.31134
sequence = CCTACTGTATACAGCACA

Gene: CMM_0732: Major facilitator superfamily transporter
 
Janibacter sp. HTCC2649

Gene: JNB_14188: Major facilitator superfamily transporter
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Major facilitator superfamily transporter
Arth_3542
 
Arthrobacter aurescens TC1

Gene: AAur_0620: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
*
Arthrobacter chlorophenolicus A6

Site:
position = -31
score = 5.03079
sequence = CATTATGTATACAACAGA

Gene: Achl_3242: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
*
Arthrobacter sp. FB24

Site:
position = -31
score = 5.07773
sequence = CATCATGTATACAACAGA

Gene: Arth_3542: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2
*
Clavibacter michiganensis subsp. michiganensis NCPPB 382

Site:
position = -27
score = 5.04929
sequence = CGCTATGTATACATCACG

Gene: CMM_0734: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201

Gene: KRH_21850: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
 
CRON 3.
Arth_3539
 
Arthrobacter aurescens TC1
*
Arthrobacter chlorophenolicus A6

Site:
position = -101
score = 5.15345
sequence = TGTAATGTATACATTACG

Gene: Achl_3239: Protein of unknown function DUF2848
*
Arthrobacter sp. FB24

Site:
position = -100
score = 4.86413
sequence = TTAAATGTATACATTACG

Gene: Arth_3539: Protein of unknown function DUF2848
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2
*
Clavibacter michiganensis subsp. michiganensis NCPPB 382

Site:
position = -97
score = 5.31134
sequence = TGTGCTGTATACAGTAGG

Gene: CMM_0731: Protein of unknown function DUF2848
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Protein of unknown function DUF2848
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD