Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog SAH_riboswitch - Comamonadaceae

Properties
Regulator type: RNA regulatory element
Name: SAH_riboswitch
RFAM: RF01057
Regulation mode:
Biological process: Methionine metabolism
Effector: S-adenosylhomocysteine
Phylum: Proteobacteria/Beta
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1 4 2
Acidovorax sp. JS42 4 2
Comamonas testosteroni KF-1 4 2
Delftia acidovorans SPH-1 4 2
Leptothrix cholodnii SP-6 4 2
Methylibium petroleiphilum PM1 4 2
Polaromonas naphthalenivorans CJ2 4 2
Polaromonas sp. JS666 4 2
Rhodoferax ferrireducens DSM 15236 4 2
Variovorax paradoxus S110 4 2
Verminephrobacter eiseniae EF01-2 3 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
metH
*
Acidovorax avenae subsp. citrulli AAC00-1

Site:
position = -143
score = 34.64
sequence = CCTCCGAGGAGCGTT...

Gene: Aave_0214: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
*
Acidovorax sp. JS42

Site:
position = -202
score = 25.89
sequence = TTCCCGAGGAGCGCT...

Gene: Ajs_0147: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
*
Comamonas testosteroni KF-1

Site:
position = -145
score = 51.79
sequence = CCCCCGAGGAGCGCT...

Gene: CtesDRAFT_4006: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
*
Delftia acidovorans SPH-1

Site:
position = -152
score = 23.32
sequence = GCCCGAGGAGCGTTG...

Gene: Daci_0232: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
*
Leptothrix cholodnii SP-6

Site:
position = -155
score = 45.12
sequence = TCCCCGAGGAGCGTT...

Gene: Lcho_3270: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
*
Methylibium petroleiphilum PM1

Site:
position = -163
score = 41.2
sequence = TGCTCGAGGAGCGTT...

Gene: Mpe_A0168: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
*
Polaromonas naphthalenivorans CJ2

Site:
position = -106
score = 49.98
sequence = AACTCAAGGAGCGTT...

Gene: Pnap_0117: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
*
Polaromonas sp. JS666

Site:
position = -110
score = 48.54
sequence = AACCCAAGGAGCGTT...

Gene: Bpro_0174: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
*
Rhodoferax ferrireducens DSM 15236

Site:
position = -93
score = 55.57
sequence = CTTCCAAGGAGCGTT...

Gene: Rfer_0466: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
*
Variovorax paradoxus S110

Site:
position = -133
score = 35.52
sequence = TTCCAAGGAGCGTTG...

Gene: Vapar_0171: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0014: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
 
CRON 2.
ahcY
*
Acidovorax avenae subsp. citrulli AAC00-1

Site:
position = -165
score = 42.53
sequence = CCCTACCGAGGAGCG...

Gene: Aave_4060: Adenosylhomocysteinase (EC 3.3.1.1)
*
Acidovorax sp. JS42

Site:
position = -147
score = 60.01
sequence = TTTCCGAGGAGCGTT...

Gene: Ajs_0618: Adenosylhomocysteinase (EC 3.3.1.1)
*
Comamonas testosteroni KF-1

Site:
position = -171
score = 45.25
sequence = CATCCGAGGAGCGTT...

Gene: CtesDRAFT_4458: Adenosylhomocysteinase (EC 3.3.1.1)
*
Delftia acidovorans SPH-1

Site:
position = -156
score = 52.24
sequence = CCTCTCCGAGGAGCG...

Gene: Daci_5919: Adenosylhomocysteinase (EC 3.3.1.1)
*
Leptothrix cholodnii SP-6

Site:
position = -175
score = 55.51
sequence = CTGTTTCGAGGAGCG...

Gene: Lcho_0119: Adenosylhomocysteinase (EC 3.3.1.1)
*
Methylibium petroleiphilum PM1

Site:
position = -148
score = 63.09
sequence = CTTTCGAGGAGCGTT...

Gene: Mpe_A3286: Adenosylhomocysteinase (EC 3.3.1.1)
*
Polaromonas naphthalenivorans CJ2

Site:
position = -176
score = 50.19
sequence = CTCCTGAGGAGCGTT...

Gene: Pnap_0489: Adenosylhomocysteinase (EC 3.3.1.1)
*
Polaromonas sp. JS666

Site:
position = -173
score = 52.7
sequence = GCTTCCTGAGGAGCG...

Gene: Bpro_4132: Adenosylhomocysteinase (EC 3.3.1.1)
*
Rhodoferax ferrireducens DSM 15236

Site:
position = -187
score = 43.26
sequence = TTTCCGAGGAGCGTT...

Gene: Rfer_0652: Adenosylhomocysteinase (EC 3.3.1.1)
*
Variovorax paradoxus S110

Site:
position = -136
score = 45.06
sequence = CGGTTCCGAGGAGCG...

Gene: Vapar_4683: Adenosylhomocysteinase (EC 3.3.1.1)
*
Verminephrobacter eiseniae EF01-2

Site:
position = -155
score = 46.24
sequence = GCTCCGAGGAGCGTT...

Gene: Veis_0656: Adenosylhomocysteinase (EC 3.3.1.1)
Adenosylhomocysteinase (EC 3.3.1.1)
COG1189
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4059: S-adenosyl-L-methionine-dependent ribosomal RNA methyltransferase
 
Acidovorax sp. JS42

Gene: Ajs_0619: S-adenosyl-L-methionine-dependent ribosomal RNA methyltransferase
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4459: S-adenosyl-L-methionine-dependent ribosomal RNA methyltransferase
 
Delftia acidovorans SPH-1

Gene: Daci_5918: S-adenosyl-L-methionine-dependent ribosomal RNA methyltransferase
 
Leptothrix cholodnii SP-6

Gene: Lcho_0118: S-adenosyl-L-methionine-dependent ribosomal RNA methyltransferase
 
Methylibium petroleiphilum PM1

Gene: Mpe_A3287: S-adenosyl-L-methionine-dependent ribosomal RNA methyltransferase
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_0490: S-adenosyl-L-methionine-dependent ribosomal RNA methyltransferase
 
Polaromonas sp. JS666

Gene: Bpro_4131: S-adenosyl-L-methionine-dependent ribosomal RNA methyltransferase
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0653: S-adenosyl-L-methionine-dependent ribosomal RNA methyltransferase
 
Variovorax paradoxus S110

Gene: Vapar_4682: S-adenosyl-L-methionine-dependent ribosomal RNA methyltransferase
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0655: S-adenosyl-L-methionine-dependent ribosomal RNA methyltransferase
S-adenosyl-L-methionine-dependent ribosomal RNA methyltransferase
metF
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4058: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Acidovorax sp. JS42

Gene: Ajs_0620: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4460: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Delftia acidovorans SPH-1

Gene: Daci_5917: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Leptothrix cholodnii SP-6

Gene: Lcho_0117: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A3288: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_0491: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Polaromonas sp. JS666

Gene: Bpro_4130: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0654: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Variovorax paradoxus S110

Gene: Vapar_4681: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0654: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD