Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxR2 - Micrococcineae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine biosynthesis
Effector: Pyridoxal-5-phosphate
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 4 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Arthrobacter aurescens TC1
Arthrobacter chlorophenolicus A6
Arthrobacter sp. FB24
Beutenbergia cavernae DSM 12333
Brachybacterium faecium DSM 4810 2 2
Brevibacterium linens BL2
Clavibacter michiganensis subsp. michiganensis NCPPB 382
Janibacter sp. HTCC2649
Jonesia denitrificans DSM 20603
Kocuria rhizophila DC2201
Kytococcus sedentarius DSM 20547
Leifsonia xyli subsp. xyli str. CTCB07 4 2
Renibacterium salmoninarum ATCC 33209
Tropheryma whipplei str. Twist
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pdxR2
 
Arthrobacter aurescens TC1
 
Arthrobacter chlorophenolicus A6
 
Arthrobacter sp. FB24
 
Beutenbergia cavernae DSM 12333
*
Brachybacterium faecium DSM 4810

Site:
position = -114
score = 4.10093
sequence = ATTGATCTGTGCCAAA

Gene: Bfae_00360: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547
*
Leifsonia xyli subsp. xyli str. CTCB07

Site:
position = -39
score = 5.49289
sequence = TTTGGCCTATGCCAAA

Gene: Lxx10730: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family
pdxK
 
Arthrobacter aurescens TC1
 
Arthrobacter chlorophenolicus A6
 
Arthrobacter sp. FB24
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649

Gene: JNB_20478: Pyridoxal kinase (EC 2.7.1.35)
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07

Gene: Lxx10710: Pyridoxal kinase (EC 2.7.1.35)
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Pyridoxal kinase (EC 2.7.1.35)
 
CRON 2.
pdxS
 
Arthrobacter aurescens TC1

Gene: AAur_0487: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 2
Arthrobacter chlorophenolicus A6

Gene: Achl_2776: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)

Gene: Achl_2040: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 2
Arthrobacter sp. FB24

Gene: Arth_2314: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)

Gene: Arth_1760: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Beutenbergia cavernae DSM 12333

Gene: Bcav_1986: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
*
Brachybacterium faecium DSM 4810

Site:
position = -84
score = 4.10093
sequence = TTTGGCACAGATCAAT

Gene: Bfae_00350: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Brevibacterium linens BL2

Gene: BlinB01003388: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382

Gene: CMM_1819: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Janibacter sp. HTCC2649

Gene: JNB_02405: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Jonesia denitrificans DSM 20603

Gene: Jden_1600: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Kocuria rhizophila DC2201

Gene: KRH_01130: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Kytococcus sedentarius DSM 20547

Gene: Ksed_15370: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
*
Leifsonia xyli subsp. xyli str. CTCB07

Site:
position = -46
score = 5.49289
sequence = TTTGGCATAGGCCAAA

Gene: Lxx10720: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Renibacterium salmoninarum ATCC 33209

Gene: RSal33209_2009: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Tropheryma whipplei str. Twist

Gene: TW264: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
pdxT
 
Arthrobacter aurescens TC1

Gene: AAur_2301: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 2
Arthrobacter chlorophenolicus A6

Gene: Achl_2035: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)

Gene: Achl_3253: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Arthrobacter sp. FB24

Gene: Arth_2305: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Beutenbergia cavernae DSM 12333

Gene: Bcav_1988: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2

Gene: BlinB01003389: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382

Gene: CMM_1818: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Janibacter sp. HTCC2649

Gene: JNB_02435: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Jonesia denitrificans DSM 20603

Gene: Jden_1601: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Kocuria rhizophila DC2201

Gene: KRH_01120: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Kytococcus sedentarius DSM 20547

Gene: Ksed_15360: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Leifsonia xyli subsp. xyli str. CTCB07

Gene: Lxx10740: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Renibacterium salmoninarum ATCC 33209

Gene: RSal33209_2003: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Tropheryma whipplei str. Twist

Gene: TW265: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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