Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog BioR - Rhodobacterales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Biotin biosynthesis
Effector:
Phylum: Alphaproteobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 18 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Hyphomonas neptunium ATCC 15444
Jannaschia sp. CCS1
Loktanella vestfoldensis SKA53
Oceanicaulis alexandrii HTCC2633
Oceanicola batsensis HTCC2597
Oceanicola granulosus HTCC2516
Paracoccus denitrificans PD1222 10 4
Rhodobacter sphaeroides 2.4.1 3 2
Rhodobacterales bacterium HTCC2654
Roseobacter sp. MED193 4 1
Roseovarius nubinhibens ISM
Roseovarius sp. 217
Silicibacter TM1040 3 1
Silicibacter pomeroyi DSS-3 3 2
Sulfitobacter sp. EE-36 3 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
bioM
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1
 
Loktanella vestfoldensis SKA53
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222

Gene: Pden_5031: ATPase component BioM of energizing module of biotin ECF transporter
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2175: ATPase component BioM of energizing module of biotin ECF transporter
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_23308: ATPase component BioM of energizing module of biotin ECF transporter
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
*
Silicibacter TM1040

Site:
position = -94
score = 4.82597
sequence = TTATAGATAA

Gene: TM1040_3661: ATPase component BioM of energizing module of biotin ECF transporter
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36

Gene: EE36_08678: ATPase component BioM of energizing module of biotin ECF transporter
ATPase component BioM of energizing module of biotin ECF transporter
bioN
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1
 
Loktanella vestfoldensis SKA53
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222

Gene: Pden_5032: Transmembrane component BioN of energizing module of biotin ECF transporter
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2174: Transmembrane component BioN of energizing module of biotin ECF transporter
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_23303: Transmembrane component BioN of energizing module of biotin ECF transporter
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Silicibacter TM1040

Gene: TM1040_3660: Transmembrane component BioN of energizing module of biotin ECF transporter
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36

Gene: EE36_08683: Transmembrane component BioN of energizing module of biotin ECF transporter
Transmembrane component BioN of energizing module of biotin ECF transporter
bioY
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1
 
Loktanella vestfoldensis SKA53
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222

Gene: Pden_5033: Substrate-specific component BioY of biotin ECF transporter
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2173: Substrate-specific component BioY of biotin ECF transporter
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_23298: Substrate-specific component BioY of biotin ECF transporter
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Silicibacter TM1040

Gene: TM1040_3659: Substrate-specific component BioY of biotin ECF transporter
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36

Gene: EE36_05348: Substrate-specific component BioY of biotin ECF transporter
Substrate-specific component BioY of biotin ECF transporter
 
CRON 2.
bioB
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_0048: Biotin synthase (EC 2.8.1.6)
 
Jannaschia sp. CCS1
 
Loktanella vestfoldensis SKA53
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_11183: Biotin synthase (EC 2.8.1.6)
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
*2
Paracoccus denitrificans PD1222

Gene: Pden_1433: Biotin synthase (EC 2.8.1.6)

Site:
position = -80
score = 4.22582
sequence = TAATAGATAA

Site:
position = -37
score = 4.07533
sequence = TTATAGATAC

Gene: Pden_2916: Biotin synthase (EC 2.8.1.6)
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_1923: Biotin synthase (EC 2.8.1.6)
 
Rhodobacterales bacterium HTCC2654
*
Roseobacter sp. MED193

Site:
position = -164
score = 4.82597
sequence = TTATAGATAA

Site:
position = -132
score = 3.62979
sequence = TTATAGATGG

Site:
position = -67
score = 4.07533
sequence = ATATCTATAA

Gene: MED193_07723: Biotin synthase (EC 2.8.1.6)
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3

Gene: SPO3338: Biotin synthase (EC 2.8.1.6)
 
Sulfitobacter sp. EE-36

Gene: EE36_13893: Biotin synthase (EC 2.8.1.6)
Biotin synthase (EC 2.8.1.6)
bioF
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1
 
Loktanella vestfoldensis SKA53
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222

Gene: Pden_2917: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Rhodobacter sphaeroides 2.4.1
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193

Gene: MED193_07718: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
8-amino-7-oxononanoate synthase (EC 2.3.1.47)
bioD
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1
 
Loktanella vestfoldensis SKA53
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222

Gene: Pden_2918: Dethiobiotin synthetase (EC 6.3.3.3)
 
Rhodobacter sphaeroides 2.4.1
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193

Gene: MED193_07713: Dethiobiotin synthetase (EC 6.3.3.3)
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Dethiobiotin synthetase (EC 6.3.3.3)
bioA
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_1247: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Jannaschia sp. CCS1
 
Loktanella vestfoldensis SKA53
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222

Gene: Pden_2919: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Rhodobacter sphaeroides 2.4.1
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193

Gene: MED193_07708: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
bioG
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1
 
Loktanella vestfoldensis SKA53
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222

Gene: Pden_2920: Biotin synthesis protein bioG
 
Rhodobacter sphaeroides 2.4.1
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Biotin synthesis protein bioG
bioC
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1
 
Loktanella vestfoldensis SKA53
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
 
Paracoccus denitrificans PD1222

Gene: Pden_2921: Biotin synthesis protein bioC
 
Rhodobacter sphaeroides 2.4.1
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Sulfitobacter sp. EE-36
Biotin synthesis protein bioC
bioY
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1
 
Loktanella vestfoldensis SKA53
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
*
Paracoccus denitrificans PD1222

Site:
position = -84
score = 4.82597
sequence = TTATCTATAA

Site:
position = -40
score = 4.39409
sequence = TTATAGATAG

Gene: Pden_1432: Core component BioY of biotin ECF transporter
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -203
score = 4.82597
sequence = TTATCTATAA

Site:
position = -159
score = 4.39409
sequence = TTATAGATAG

Gene: RSP_1924: Core component BioY of biotin ECF transporter
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Silicibacter TM1040
*
Silicibacter pomeroyi DSS-3

Site:
position = -64
score = 4.39409
sequence = TTATAGATAG

Site:
position = -23
score = 4.82597
sequence = TTATCTATAA

Gene: SPO3339: Core component BioY of biotin ECF transporter
*
Sulfitobacter sp. EE-36

Site:
position = -83
score = 4.82597
sequence = TTATCTATAA

Gene: EE36_13898: Core component BioY of biotin ECF transporter
Core component BioY of biotin ECF transporter
 
CRON 3.
bioR
 
Hyphomonas neptunium ATCC 15444
 
Jannaschia sp. CCS1
 
Loktanella vestfoldensis SKA53
 
Oceanicaulis alexandrii HTCC2633
 
Oceanicola batsensis HTCC2597
 
Oceanicola granulosus HTCC2516
*2
Paracoccus denitrificans PD1222

Site:
position = -39
score = 4.32371
sequence = TTATCGACAA

Gene: Pden_2922: Biotin metabolism regulatory protein BioR, GntR family

Site:
position = -13
score = 4.82597
sequence = TTATCTATAA

Gene: Pden_1431: Biotin metabolism regulatory protein BioR, GntR family
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -13
score = 4.82597
sequence = TTATCTATAA

Gene: RSP_1925: Biotin metabolism regulatory protein BioR, GntR family
 
Rhodobacterales bacterium HTCC2654
 
Roseobacter sp. MED193

Gene: MED193_13378: Biotin metabolism regulatory protein BioR, GntR family
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Silicibacter TM1040

Gene: TM1040_3010: Biotin metabolism regulatory protein BioR, GntR family
*
Silicibacter pomeroyi DSS-3

Site:
position = -13
score = 4.82597
sequence = TTATCTATAA

Gene: SPO3340: Biotin metabolism regulatory protein BioR, GntR family
*
Sulfitobacter sp. EE-36

Site:
position = -61
score = 4.39409
sequence = CTATCTATAA

Gene: EE36_13903: Biotin metabolism regulatory protein BioR, GntR family
Biotin metabolism regulatory protein BioR, GntR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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