Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog BioR - Rhizobiales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Biotin biosynthesis
Effector:
Phylum: Alphaproteobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 16 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Agrobacterium tumefaciens str. C58 (Cereon) 5 1
Azorhizobium caulinodans ORS 571 3 2
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110 6 2
Bradyrhizobium sp. BTAi1 5 2
Brucella melitensis 16M 7 3
Mesorhizobium loti MAFF303099 2 1
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42
Rhizobium leguminosarum bv. viciae 3841
Rhizobium sp. NGR234 5 1
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021
Xanthobacter autotrophicus Py2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
bioB
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = 85
score = 4.82597
sequence = TTATCTATAA

Gene: Atu3997: Biotin synthase (EC 2.8.1.6)
 
Azorhizobium caulinodans ORS 571

Gene: AZC_0361: Biotin synthase (EC 2.8.1.6)
 
Bartonella quintana str. Toulouse
*
Bradyrhizobium japonicum USDA 110

Site:
position = -46
score = 4.39409
sequence = CTATAGATAA

Site:
position = -27
score = 4.32371
sequence = TTATCTACAA

Gene: blr2095: Biotin synthase (EC 2.8.1.6)
*
Bradyrhizobium sp. BTAi1

Site:
position = -49
score = 4.22582
sequence = TTATAGATTA

Gene: BBta_2776: Biotin synthase (EC 2.8.1.6)
*
Brucella melitensis 16M

Site:
position = -92
score = 4.22582
sequence = TTATCTATTA

Site:
position = -22
score = 4.32371
sequence = TTATCTACAA

Gene: BMEII0775: Biotin synthase (EC 2.8.1.6)
 3
Mesorhizobium loti MAFF303099

Gene: mll9100: Biotin synthase (EC 2.8.1.6)

Gene: mll6007: Biotin synthase (EC 2.8.1.6)

Gene: mll5831: Biotin synthase (EC 2.8.1.6)
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255

Gene: Nwi_0243: Biotin synthase (EC 2.8.1.6)
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
*
Rhizobium sp. NGR234

Site:
position = -60
score = 4.39409
sequence = CTATAGATAA

Gene: NGR_c25140: Biotin synthase (EC 2.8.1.6)
 
Rhodopseudomonas palustris CGA009

Gene: RPA2045: Biotin synthase (EC 2.8.1.6)
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2

Gene: Xaut_1117: Biotin synthase (EC 2.8.1.6)
Biotin synthase (EC 2.8.1.6)
panD
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: blr2096: Aspartate 1-decarboxylase (EC 4.1.1.11)
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
aspartate alpha-decarboxylase
bioF
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu3998: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: blr2097: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Bradyrhizobium sp. BTAi1

Gene: BBta_2777: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Brucella melitensis 16M

Gene: BMEII0776: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 3
Mesorhizobium loti MAFF303099

Gene: mll9099: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)

Gene: mll6006: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)

Gene: mll5830: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255

Gene: Nwi_2421: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234

Gene: NGR_c25130: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Rhodopseudomonas palustris CGA009

Gene: RPA2972: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2

Gene: Xaut_2918: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
8-amino-7-oxononanoate synthase (EC 2.3.1.47)
bioD
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu3999: Dethiobiotin synthetase (EC 6.3.3.3)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: blr2098: Dethiobiotin synthetase (EC 6.3.3.3)
 
Bradyrhizobium sp. BTAi1

Gene: BBta_2778: Dethiobiotin synthetase (EC 6.3.3.3)
 
Brucella melitensis 16M

Gene: BMEII0777: Dethiobiotin synthetase (EC 6.3.3.3)
 3
Mesorhizobium loti MAFF303099

Gene: mll9098: Dethiobiotin synthetase (EC 6.3.3.3)

Gene: mll6005: Dethiobiotin synthetase (EC 6.3.3.3)

Gene: mll5829: Dethiobiotin synthetase (EC 6.3.3.3)
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255

Gene: Nwi_2420: Dethiobiotin synthetase (EC 6.3.3.3)
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234

Gene: NGR_c25120: Dethiobiotin synthetase (EC 6.3.3.3)
 
Rhodopseudomonas palustris CGA009

Gene: RPA2971: Dethiobiotin synthetase (EC 6.3.3.3)
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2

Gene: Xaut_2919: Dethiobiotin synthetase (EC 6.3.3.3)
Dethiobiotin synthetase (EC 6.3.3.3)
bioA
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu4000: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: blr2099: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Bradyrhizobium sp. BTAi1

Gene: BBta_2779: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Brucella melitensis 16M

Gene: BMEII0778: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 3
Mesorhizobium loti MAFF303099

Gene: mll9097: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)

Gene: mll6003: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)

Gene: mll5828: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255

Gene: Nwi_2419: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234

Gene: NGR_c25110: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Rhodopseudomonas palustris CGA009

Gene: RPA2970: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2

Gene: Xaut_2920: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
bioZ
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -105
score = 4.06166
sequence = TTATCGATGA

Gene: Atu4001: Biotin synthesis protein bioZ
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M

Gene: BMEII0779: Biotin synthesis protein bioZ
 2
Mesorhizobium loti MAFF303099

Gene: mll9094: Biotin synthesis protein bioZ

Gene: mll5827: Biotin synthesis protein bioZ
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234

Gene: NGR_c25100: Biotin synthesis protein bioZ
 
Rhodopseudomonas palustris CGA009

Gene: RPA1298: Biotin synthesis protein bioZ
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2

Gene: Xaut_2921: Biotin synthesis protein bioZ
Biotin synthesis protein bioZ
bioR
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu0791: Biotin metabolism regulatory protein BioR, GntR family
*
Azorhizobium caulinodans ORS 571

Site:
position = -13
score = 4.82597
sequence = TTATCTATAA

Gene: AZC_0363: Biotin metabolism regulatory protein BioR, GntR family
 
Bartonella quintana str. Toulouse
*
Bradyrhizobium japonicum USDA 110

Site:
position = -97
score = 4.32371
sequence = TTGTAGATAA

Site:
position = -78
score = 4.39409
sequence = TTATCTATAG

Gene: bll2094: Biotin metabolism regulatory protein BioR, GntR family
*
Bradyrhizobium sp. BTAi1

Site:
position = -83
score = 4.22582
sequence = TAATCTATAA

Gene: BBta_2775: Biotin metabolism regulatory protein BioR, GntR family
*
Brucella melitensis 16M

Site:
position = -14
score = 4.82597
sequence = TTATCTATAA

Gene: BMEI0320: Biotin metabolism regulatory protein BioR, GntR family
*
Mesorhizobium loti MAFF303099

Site:
position = -13
score = 4.82597
sequence = TTATCTATAA

Gene: mlr7428: Biotin metabolism regulatory protein BioR, GntR family
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234

Gene: NGR_c05470: Biotin metabolism regulatory protein BioR, GntR family
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Biotin metabolism regulatory protein BioR, GntR family
bioY
 
Agrobacterium tumefaciens str. C58 (Cereon)
*2
Azorhizobium caulinodans ORS 571

Gene: AZC_2177: Substrate-specific component BioY of biotin ECF transporter

Site:
position = 28
score = 4.82597
sequence = TTATCTATAA

Gene: AZC_0362: Substrate-specific component BioY of biotin ECF transporter
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
*
Brucella melitensis 16M

Site:
position = -22
score = 4.82597
sequence = TTATCTATAA

Gene: BMEI0319: Substrate-specific component BioY of biotin ECF transporter
 
Mesorhizobium loti MAFF303099

Gene: mlr7429: Substrate-specific component BioY of biotin ECF transporter
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2

Gene: Xaut_4329: Substrate-specific component BioY of biotin ECF transporter
Substrate-specific component BioY of biotin ECF transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD