Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog GabR - Burkholderia

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Gamma-aminobutyrate utilization
Effector: Gamma-aminobutyric acid
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 16 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Burkholderia mallei ATCC 23344 5 2
Burkholderia phymatum STM815 8 3
Burkholderia glumae BGR1 2 1
Burkholderia cepacia AMMD 6 2
Burkholderia pseudomallei K96243 6 2
Burkholderia sp. 383 6 2
Burkholderia vietnamiensis G4 6 2
Burkholderia xenovorans LB400 6 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
gabT
*
Burkholderia mallei ATCC 23344

Site:
position = -139
score = 11.9334
sequence = TTGGCTC-(16)-ATGGCTC-(9)-GAGCCAA

Gene: BMAA1480: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
*2
Burkholderia phymatum STM815

Site:
position = -143
score = 10.8175
sequence = ATGGCTC-(16)-GTGGCTC-(9)-GAGCCGT

Gene: Bphy_4851: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)

Site:
position = -114
score = 11.9334
sequence = TTGGCTC-(16)-ATGGCTC-(9)-GAGCCAA

Gene: Bphy_4618: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
*
Burkholderia glumae BGR1

Site:
position = -127
score = 11.9334
sequence = TTGGCTC-(16)-ATGGCTC-(9)-GAGCCAA

Gene: bglu_2g03380: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
*
Burkholderia cepacia AMMD

Site:
position = -66
score = 11.9334
sequence = TTGGCTC-(16)-ATGGCTC-(9)-GAGCCAA

Gene: Bamb_4711: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
*
Burkholderia pseudomallei K96243

Site:
position = -139
score = 11.9334
sequence = TTGGCTC-(16)-ATGGCTC-(9)-GAGCCAA

Gene: BPSS0281: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
*
Burkholderia sp. 383

Site:
position = -118
score = 11.9334
sequence = TTGGCTC-(16)-ATGGCTC-(9)-GAGCCAA

Gene: Bcep18194_B0280: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
*
Burkholderia vietnamiensis G4

Site:
position = -124
score = 11.9334
sequence = TTGGCTC-(16)-ATGGCTC-(9)-GAGCCAA

Gene: Bcep1808_3589: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
*
Burkholderia xenovorans LB400

Site:
position = -114
score = 11.9334
sequence = TTGGCTC-(16)-ATGGCTC-(9)-GAGCCAA

Gene: Bxe_B0834: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
gabD
 
Burkholderia mallei ATCC 23344

Gene: BMAA1481: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 2
Burkholderia phymatum STM815

Gene: Bphy_4617: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)

Gene: Bphy_4850: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Burkholderia glumae BGR1

Gene: bglu_2g03370: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Burkholderia cepacia AMMD

Gene: Bamb_4712: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Burkholderia pseudomallei K96243

Gene: BPSS0280: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Burkholderia sp. 383

Gene: Bcep18194_B0279: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_3590: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Burkholderia xenovorans LB400

Gene: Bxe_B0833: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
CRON 2.
gbtA
*
Burkholderia mallei ATCC 23344

Site:
position = -107
score = 11.9124
sequence = GTGGTTC-(16)-ATGGTTC-(9)-GAACCGT

Gene: BMAA0431: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component
*4
Burkholderia phymatum STM815

Gene: Bphy_6039: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component

Gene: Bphy_2383: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component

Gene: Bphy_7799: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component

Site:
position = -161
score = 11.9124
sequence = GTGGTTC-(16)-ATGGTTC-(9)-GAACCGT

Gene: Bphy_4321: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component
 
Burkholderia glumae BGR1
*2
Burkholderia cepacia AMMD

Site:
position = -107
score = 11.1193
sequence = GTGGTCC-(16)-ATGGTTC-(9)-GGACCGT

Gene: Bamb_3296: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component

Gene: Bamb_4297: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component
*
Burkholderia pseudomallei K96243

Site:
position = -107
score = 11.9124
sequence = GTGGTTC-(16)-ATGGTTC-(9)-GAACCGT

Gene: BPSS1738: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component
*
Burkholderia sp. 383

Site:
position = -107
score = 11.6588
sequence = GTGGTCC-(16)-ATGGTTC-(9)-GAACCGT

Gene: Bcep18194_B2170: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component
*
Burkholderia vietnamiensis G4

Site:
position = -107
score = 11.6588
sequence = GTGGTCC-(16)-ATGGTTC-(9)-GAACCGT

Gene: Bcep1808_4395: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component
*2
Burkholderia xenovorans LB400

Gene: Bxe_A3469: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component

Site:
position = -129
score = 11.9124
sequence = GTGGTTC-(16)-ATGGTTC-(9)-GAACCGT

Gene: Bxe_B2933: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component
Predicted gamma-aminobutyrate ABC transporter, ATP-binding component
gbtD
 
Burkholderia mallei ATCC 23344

Gene: BMAA0432: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
 4
Burkholderia phymatum STM815

Gene: Bphy_2382: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein

Gene: Bphy_7798: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein

Gene: Bphy_6038: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein

Gene: Bphy_4322: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
 
Burkholderia glumae BGR1
 2
Burkholderia cepacia AMMD

Gene: Bamb_3297: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein

Gene: Bamb_4296: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
 
Burkholderia pseudomallei K96243

Gene: BPSS1737: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
 
Burkholderia sp. 383

Gene: Bcep18194_B2169: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_4396: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
 2
Burkholderia xenovorans LB400

Gene: Bxe_B2932: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein

Gene: Bxe_A3470: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
gbtB
 
Burkholderia mallei ATCC 23344

Gene: BMAA0433: Predicted gamma-aminobutyrate ABC transporter, permease component
 4
Burkholderia phymatum STM815

Gene: Bphy_7800: Predicted gamma-aminobutyrate ABC transporter, permease component

Gene: Bphy_4323: Predicted gamma-aminobutyrate ABC transporter, permease component

Gene: Bphy_6037: Predicted gamma-aminobutyrate ABC transporter, permease component

Gene: Bphy_2381: Predicted gamma-aminobutyrate ABC transporter, permease component
 
Burkholderia glumae BGR1
 2
Burkholderia cepacia AMMD

Gene: Bamb_4295: Predicted gamma-aminobutyrate ABC transporter, permease component

Gene: Bamb_3298: Predicted gamma-aminobutyrate ABC transporter, permease component
 
Burkholderia pseudomallei K96243

Gene: BPSS1736: Predicted gamma-aminobutyrate ABC transporter, permease component
 
Burkholderia sp. 383

Gene: Bcep18194_B2168: Predicted gamma-aminobutyrate ABC transporter, permease component
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_4397: Predicted gamma-aminobutyrate ABC transporter, permease component
 2
Burkholderia xenovorans LB400

Gene: Bxe_A3471: Predicted gamma-aminobutyrate ABC transporter, permease component

Gene: Bxe_B2931: Predicted gamma-aminobutyrate ABC transporter, permease component
Predicted gamma-aminobutyrate ABC transporter, permease component
gbtC
 
Burkholderia mallei ATCC 23344
 4
Burkholderia phymatum STM815

Gene: Bphy_2380: Predicted gamma-aminobutyrate ABC transporter, permease component

Gene: Bphy_6036: Predicted gamma-aminobutyrate ABC transporter, permease component

Gene: Bphy_4324: Predicted gamma-aminobutyrate ABC transporter, permease component

Gene: Bphy_7801: Predicted gamma-aminobutyrate ABC transporter, permease component
 
Burkholderia glumae BGR1
 2
Burkholderia cepacia AMMD

Gene: Bamb_4294: Predicted gamma-aminobutyrate ABC transporter, permease component

Gene: Bamb_3299: Predicted gamma-aminobutyrate ABC transporter, permease component
 
Burkholderia pseudomallei K96243

Gene: BPSS1735: Predicted gamma-aminobutyrate ABC transporter, permease component
 
Burkholderia sp. 383

Gene: Bcep18194_B2167: Predicted gamma-aminobutyrate ABC transporter, permease component
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_4398: Predicted gamma-aminobutyrate ABC transporter, permease component
 2
Burkholderia xenovorans LB400

Gene: Bxe_A3472: Predicted gamma-aminobutyrate ABC transporter, permease component

Gene: Bxe_B2930: Predicted gamma-aminobutyrate ABC transporter, permease component
Predicted gamma-aminobutyrate ABC transporter, permease component
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD