Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxR2 - Xanthomonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis
Effector: Pyridoxal-5-phosphate
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Stenotrophomonas maltophilia K279a 3 2
Xanthomonas axonopodis pv. citri str. 306
Xanthomonas campestris pv. campestris str. ATCC 33913
Xylella fastidiosa 9a5c
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pdxR2
*
Stenotrophomonas maltophilia K279a

Site:
position = -16
score = 5.73391
sequence = TTTGGCATAGGACAAA

Gene: Smlt2930: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family
 
Xanthomonas axonopodis pv. citri str. 306
 
Xanthomonas campestris pv. campestris str. ATCC 33913
 
Xylella fastidiosa 9a5c
Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family
 
CRON 2.
COG0325
*
Stenotrophomonas maltophilia K279a

Site:
position = -76
score = 5.73391
sequence = TTTGTCCTATGCCAAA

Gene: Smlt2931: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type
 
Xanthomonas axonopodis pv. citri str. 306
 
Xanthomonas campestris pv. campestris str. ATCC 33913
 
Xylella fastidiosa 9a5c

Gene: XF1717: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type
Predicted pyridoxal phosphate-dependent enzyme, YBL036C type
COG0518
 
Stenotrophomonas maltophilia K279a

Gene: Smlt2932: Putative glutamine amidotransferase-like protein
 
Xanthomonas axonopodis pv. citri str. 306
 
Xanthomonas campestris pv. campestris str. ATCC 33913
 
Xylella fastidiosa 9a5c
Putative glutamine amidotransferase-like protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD