Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxR2 - Alcaligenaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis
Effector: Pyridoxal-5-phosphate
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 3 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bordetella avium 197N 2 1
Bordetella bronchiseptica RB50 3 2
Bordetella petrii DSM 12804
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG0325
*
Bordetella avium 197N

Site:
position = -71
score = 5.71521
sequence = TTTGACCTAGGACAAA

Gene: BAV1600: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type
*
Bordetella bronchiseptica RB50

Site:
position = -38
score = 5.97494
sequence = TTTGTCATAGGACAAA

Gene: BB2871: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type
 
Bordetella petrii DSM 12804

Gene: Bpet2896: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type
Predicted pyridoxal phosphate-dependent enzyme, YBL036C type
pdxK
 
Bordetella avium 197N

Gene: BAV1601: Pyridoxal kinase (EC 2.7.1.35)
 
Bordetella bronchiseptica RB50

Gene: BB2870: Pyridoxal kinase (EC 2.7.1.35)
 
Bordetella petrii DSM 12804

Gene: Bpet2897: Pyridoxal kinase (EC 2.7.1.35)
Pyridoxal kinase (EC 2.7.1.35)
 
CRON 2.
pdxR2
 
Bordetella avium 197N

Gene: BAV1602: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family
*
Bordetella bronchiseptica RB50

Site:
position = -37
score = 5.97494
sequence = TTTGTCCTATGACAAA

Gene: BB2872: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family
 
Bordetella petrii DSM 12804
Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD