Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog DVUA0057 - Desulfovibrionales

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode:
Biological process: Biofilm formation
Effector:
Phylum: Proteobacteria/Delta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 29 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Desulfohalobium retbaense DSM 5692
Desulfomicrobium baculatum DSM 4028 5 4
Desulfovibrio desulfuricans G20 4 4
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Desulfovibrio magneticus RS-1
Desulfovibrio piger ATCC 29098
Desulfovibrio salexigens DSM 2638 2 1
Desulfovibrio vulgaris Hildenborough 8 7
Desulfovibrio vulgaris str. Miyazaki F 5 4
Lawsonia intracellularis PHE/MN1-00
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
DVU1152
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -421
score = 4.19931
sequence = TGTCGACTGTCTTTACA

Site:
position = -343
score = 4.52182
sequence = TGTCGGAAGACCTTACA

Gene: DVU1152: hypothetical protein
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
hypothetical protein
 
CRON 2.
DVUA0030
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -540
score = 4.59053
sequence = TGTTGCGTTTTCCGACA

Site:
position = -560
score = 4.59182
sequence = TGTTGCCTTATCCGACA

Gene: DVUA0030: hypothetical protein
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
hypothetical protein
 
CRON 3.
DVU0133
 
Desulfohalobium retbaense DSM 5692
*
Desulfomicrobium baculatum DSM 4028

Site:
position = -328
score = 4.24657
sequence = TGTCGGAATGCCCGGCA

Gene: Dbac_0315: protein of unknown function DUF81
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_0357: protein of unknown function DUF81
 
Desulfovibrio magneticus RS-1

Gene: DMR_16160: protein of unknown function DUF81
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_02269: protein of unknown function DUF81
*
Desulfovibrio salexigens DSM 2638

Site:
position = -283
score = 4.18291
sequence = TGTCAAAATGCCCGGCA

Gene: Desal_2192: protein of unknown function DUF81
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -442
score = 4.97006
sequence = TGTAAAAAAAGCTGACA

Gene: DVU0132: protein of unknown function DUF81
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -465
score = 4.26797
sequence = CGTAAAAAAAGCTGACA

Gene: DvMF_1984: protein of unknown function DUF81
 
Lawsonia intracellularis PHE/MN1-00
protein of unknown function DUF81
DVU0132
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0316: hypothetical membrane protein
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_0356: hypothetical membrane protein
 
Desulfovibrio magneticus RS-1

Gene: DMR_16150: hypothetical membrane protein
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_02268: hypothetical membrane protein
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_2191: hypothetical membrane protein
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU0133: hypothetical membrane protein
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_1985: hypothetical membrane protein
 
Lawsonia intracellularis PHE/MN1-00
hypothetical membrane protein
 
CRON 4.
DVUA0036
 
Desulfohalobium retbaense DSM 5692
*
Desulfomicrobium baculatum DSM 4028

Site:
position = -549
score = 5.05996
sequence = TGTAAGTTTTTTCGACA

Gene: Dbac_2224: PEP-CTERM system TPR-repeat lipoprotein
 
Desulfovibrio desulfuricans G20

Gene: Dde_0828: PEP-CTERM system TPR-repeat lipoprotein
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -194
score = 5.24061
sequence = TGTCGGGTTTTCCGACA

Site:
position = -213
score = 4.52997
sequence = TGTCGGACAGGCTTACA

Gene: DVUA0036: PEP-CTERM system TPR-repeat lipoprotein
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -524
score = 5.41496
sequence = TGTCGGATTTTCCGACA

Site:
position = -543
score = 4.2662
sequence = TGTCGAGAGAATTTACA

Gene: DvMF_0691: PEP-CTERM system TPR-repeat lipoprotein
 
Lawsonia intracellularis PHE/MN1-00
PEP-CTERM system TPR-repeat lipoprotein
 
CRON 5.
Dbac_2232
 
Desulfohalobium retbaense DSM 5692
*
Desulfomicrobium baculatum DSM 4028

Site:
position = -142
score = 5.34313
sequence = TGTCGGATAATCTTACA

Gene: Dbac_2232: protein of unknown function DUF1555
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
protein of unknown function DUF1555
 
CRON 6.
DVUA0089
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -108
score = 4.88561
sequence = TGTAAGGTTTCTCGACA

Gene: DVUA0089: hypothetical protein
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
hypothetical protein
 
CRON 7.
DVUA0031
 
Desulfohalobium retbaense DSM 5692
*2
Desulfomicrobium baculatum DSM 4028

Site:
position = -139
score = 4.78391
sequence = TGTCGGAGAACTTTACA

Gene: Dbac_2235: protein of unknown function DUF1555

Gene: Dbac_2231: protein of unknown function DUF1555
*4
Desulfovibrio desulfuricans G20

Site:
position = -229
score = 4.6115
sequence = TGTAATTATAATCGACA

Site:
position = -147
score = 4.72757
sequence = TGTCGCTTTTTTTTACA

Site:
position = -248
score = 4.48565
sequence = TGTCAGGTATTTTTACT

Gene: Dde_2510: protein of unknown function DUF1555

Site:
position = -158
score = 5.05996
sequence = TGTCGGATTTATTTACA

Gene: Dde_2509: protein of unknown function DUF1555

Site:
position = -155
score = 4.67423
sequence = TGTCGAAAAGTATTACA

Gene: Dde_2507: protein of unknown function DUF1555

Site:
position = -274
score = 4.17953
sequence = TGTCGGAACTCATTACA

Site:
position = -167
score = 5.17825
sequence = TGTCGACTTATCTGACA

Gene: Dde_0404: protein of unknown function DUF1555
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
*2
Desulfovibrio vulgaris Hildenborough

Site:
position = -97
score = 4.82455
sequence = TGTCGGAGAACCTTACA

Gene: DVUA0031: protein of unknown function DUF1555

Site:
position = -257
score = 4.52364
sequence = TGTCGGAAAAGGCAACA

Site:
position = -168
score = 4.89229
sequence = TGTCGGATAGGTTGACA

Gene: DVUA0032: protein of unknown function DUF1555
*2
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -109
score = 5.14941
sequence = TGTCGGAATTCCTGACA

Gene: DvMF_0694: protein of unknown function DUF1555

Site:
position = -257
score = 4.58191
sequence = TGTCGGAAAAGACAACA

Site:
position = -169
score = 4.64147
sequence = TGTCGGATAGATTAACA

Gene: DvMF_0693: protein of unknown function DUF1555
 
Lawsonia intracellularis PHE/MN1-00
protein of unknown function DUF1555
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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