Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog ZraR - Desulfovibrionales

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator
Biological process: Zinc homeostasis
Effector: Zinc ion, (Zn2+)
Phylum: Proteobacteria/delta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 24 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Desulfohalobium retbaense DSM 5692
Desulfomicrobium baculatum DSM 4028
Desulfovibrio desulfuricans G20 4 3
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 1 1
Desulfovibrio magneticus RS-1 2 1
Desulfovibrio piger ATCC 29098 1 1
Desulfovibrio salexigens DSM 2638
Desulfovibrio vulgaris Hildenborough 3 2
Desulfovibrio vulgaris str. Miyazaki F 3 2
Lawsonia intracellularis PHE/MN1-00 3 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
zraS
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_1016: Sensor protein of zinc sigma-54-dependent two-component system
*
Desulfovibrio desulfuricans G20

Site:
position = -32
score = 5.00962
sequence = TGTACAAATATTGAACA

Site:
position = -50
score = 4.98329
sequence = TGTATAAAAAATAGACG

Site:
position = -84
score = 5.29568
sequence = TGTATAAAAAACATACA

Gene: Dde_0110: Sensor protein of zinc sigma-54-dependent two-component system
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_0186: Sensor protein of zinc sigma-54-dependent two-component system
*
Desulfovibrio magneticus RS-1

Site:
position = -19
score = 4.12461
sequence = TGTATAGAATGTATGCA

Gene: DMR_19620: Sensor protein of zinc sigma-54-dependent two-component system
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_02785: Sensor protein of zinc sigma-54-dependent two-component system
 
Desulfovibrio salexigens DSM 2638
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -414
score = 4.77026
sequence = CGTATGAAAATGATACA

Site:
position = -382
score = 5.01274
sequence = TGTATAAAAAATATACT

Site:
position = -74
score = 5.02148
sequence = TGTATGAAAAATAGACA

Gene: DVU3382: Sensor protein of zinc sigma-54-dependent two-component system
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -78
score = 4.5705
sequence = CGTATGAAAATCGAACA

Site:
position = -110
score = 5.09704
sequence = TGTATAAAAACTATACG

Gene: DvMF_2148: Sensor protein of zinc sigma-54-dependent two-component system
*
Lawsonia intracellularis PHE/MN1-00

Site:
position = -19
score = 5.49294
sequence = TGTATAAAAAATATACA

Gene: LI1078: Sensor protein of zinc sigma-54-dependent two-component system
Sensor protein of zinc sigma-54-dependent two-component system
zraR
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_1017: two component, sigma54 specific, transcriptional regulator, Fis family
 
Desulfovibrio desulfuricans G20

Gene: Dde_0109: two component, sigma54 specific, transcriptional regulator, Fis family
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_0187: two component, sigma54 specific, transcriptional regulator, Fis family
 
Desulfovibrio magneticus RS-1

Gene: DMR_19630: two component, sigma54 specific, transcriptional regulator, Fis family
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_02784: two component, sigma54 specific, transcriptional regulator, Fis family
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU3381: two component, sigma54 specific, transcriptional regulator, Fis family
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_2149: two component, sigma54 specific, transcriptional regulator, Fis family
 
Lawsonia intracellularis PHE/MN1-00

Gene: LI1079: two component, sigma54 specific, transcriptional regulator, Fis family
two component, sigma54 specific, transcriptional regulator, Fis family
 
CRON 2.
zraP
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028
*2
Desulfovibrio desulfuricans G20

Site:
position = -169
score = 5.29568
sequence = TGTATGTTTTTTATACA

Site:
position = -221
score = 5.00962
sequence = TGTTCAATATTTGTACA

Site:
position = -203
score = 4.98329
sequence = CGTCTATTTTTTATACA

Gene: Dde_0111: Zinc resistance-associated protein

Site:
position = -190
score = 4.82856
sequence = TGTATAAAAAAAAGACA

Site:
position = -136
score = 5.47467
sequence = TGTATAAAAATTGTACA

Site:
position = -172
score = 4.66812
sequence = TGTCTTGTTTTTATACA

Gene: Dde_2819: Zinc resistance-associated protein
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
*
Desulfovibrio piger ATCC 29098

Site:
position = -211
score = 4.2252
sequence = TGCATAAAAACTGGACA

Site:
position = -243
score = 4.685
sequence = TGTATAATTTTTGACCA

Gene: DESPIG_02788: Zinc resistance-associated protein
 
Desulfovibrio salexigens DSM 2638
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -226
score = 5.01274
sequence = AGTATATTTTTTATACA

Site:
position = -194
score = 4.77026
sequence = TGTATCATTTTCATACG

Gene: DVU3384: Zinc resistance-associated protein
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -242
score = 5.09704
sequence = CGTATAGTTTTTATACA

Site:
position = -274
score = 4.5705
sequence = TGTTCGATTTTCATACG

Gene: DvMF_2147: Zinc resistance-associated protein
 
Lawsonia intracellularis PHE/MN1-00
Zinc resistance-associated protein
 
CRON 3.
LI1080
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_0248: hypothetical protein
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0283: hypothetical protein
 
Desulfovibrio desulfuricans G20

Gene: Dde_1143: hypothetical protein
*
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Site:
position = -228
score = 4.12657
sequence = TGTTTTATTAGTAGACA

Gene: Ddes_1704: hypothetical protein
 
Desulfovibrio magneticus RS-1

Gene: DMR_39630: hypothetical protein
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_01431: hypothetical protein
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_1471: hypothetical protein
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU0772: hypothetical protein
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_2834: hypothetical protein
*
Lawsonia intracellularis PHE/MN1-00

Site:
position = 13
score = 4.94622
sequence = TGTATGAGTTTTATACA

Gene: LI1080: hypothetical protein
hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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