Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog DVU3305 - Desulfovibrionales

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/delta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 20 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Desulfohalobium retbaense DSM 5692 1 1
Desulfomicrobium baculatum DSM 4028 8 2
Desulfovibrio desulfuricans G20
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Desulfovibrio magneticus RS-1 5 2
Desulfovibrio piger ATCC 29098
Desulfovibrio salexigens DSM 2638 2 1
Desulfovibrio vulgaris Hildenborough 8 2
Desulfovibrio vulgaris str. Miyazaki F 8 2
Lawsonia intracellularis PHE/MN1-00
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
Dret_0700
*
Desulfohalobium retbaense DSM 5692

Site:
position = -591
score = 5.11865
sequence = TGTTGCAAAAAACAACG

Site:
position = -574
score = 5.11865
sequence = CGTTGCAAAAAACAACA

Gene: Dret_0700: Ion transport 2 domain protein
 
Desulfomicrobium baculatum DSM 4028
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1

Gene: DMR_19690: Ion transport 2 domain protein
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
Ion transport 2 domain protein
 
CRON 2.
Desal_0383
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098
*
Desulfovibrio salexigens DSM 2638

Site:
position = -229
score = 5.73942
sequence = CGTTGCAAAAAGCAACA

Site:
position = -152
score = 5.63082
sequence = TGTTGCAGATAGCAACA

Gene: Desal_0383: hypothetical protein
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
hypothetical protein
Desal_2700
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098
 2
Desulfovibrio salexigens DSM 2638

Gene: Desal_0382: Citrate transporter

Gene: Desal_2700: Citrate transporter
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
Citrate transporter
 
CRON 3.
DVU3302
 
Desulfohalobium retbaense DSM 5692
*
Desulfomicrobium baculatum DSM 4028

Site:
position = -220
score = 5.92282
sequence = TGTTGCGTTTTGCAACA

Site:
position = -144
score = 5.39838
sequence = CGCTGCAATCTGCAACA

Gene: Dbac_2669: hypothetical protein
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
*
Desulfovibrio magneticus RS-1

Site:
position = -86
score = 5.73942
sequence = TGTTGCAATAAGCAACG

Site:
position = -41
score = 5.67259
sequence = TGTTGCGTTTCGCAACG

Gene: DMR_10820: hypothetical protein
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -227
score = 5.6965
sequence = TGTTGCATTATGCAGCA

Site:
position = -146
score = 5.92282
sequence = TGTTGCATATCGCAACA

Gene: null: hypothetical protein
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -224
score = 5.71354
sequence = CGTTGCATTTCGCAACG

Site:
position = -146
score = 5.66558
sequence = CGTTGCACTTTGCAACA

Gene: DvMF_2106: hypothetical protein
 
Lawsonia intracellularis PHE/MN1-00
hypothetical protein
DVU3301
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_2670: hypothetical protein
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1

Gene: DMR_10830: hypothetical protein
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU3301: hypothetical protein
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_2105: hypothetical protein
 
Lawsonia intracellularis PHE/MN1-00
hypothetical protein
Dbac_2671
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_2671: Sulfate permease and related transporters (MFS superfamily)
 
Desulfovibrio desulfuricans G20

Gene: Dde_3641: Sulfate permease and related transporters (MFS superfamily)
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_1131: Sulfate permease and related transporters (MFS superfamily)
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
Sulfate permease and related transporters (MFS superfamily)
DVU3300
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_2672: hypothetical protein
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1

Gene: DMR_10840: hypothetical protein
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU3300: hypothetical protein
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_2104: hypothetical protein
 
Lawsonia intracellularis PHE/MN1-00
hypothetical protein
DVU3299
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_2673: TSUP family transporter
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1

Gene: DMR_10850: TSUP family transporter
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU3299: TSUP family transporter
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_2103: TSUP family transporter
 
Lawsonia intracellularis PHE/MN1-00
TSUP family transporter
DVU3298
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU3298: universal stress protein
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_2102: universal stress protein
 
Lawsonia intracellularis PHE/MN1-00
universal stress protein
 
CRON 4.
DVU3303
 
Desulfohalobium retbaense DSM 5692
*
Desulfomicrobium baculatum DSM 4028

Site:
position = -58
score = 5.92282
sequence = TGTTGCAAAACGCAACA

Site:
position = -134
score = 5.39838
sequence = TGTTGCAGATTGCAGCG

Gene: Dbac_2668: ATP-dependent protease, response regulator receiver protein
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
*
Desulfovibrio magneticus RS-1

Site:
position = -148
score = 5.67259
sequence = CGTTGCGAAACGCAACA

Site:
position = -103
score = 5.73942
sequence = CGTTGCTTATTGCAACA

Gene: DMR_10810: ATP-dependent protease, response regulator receiver protein
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -9
score = 5.6965
sequence = TGCTGCATAATGCAACA

Site:
position = -90
score = 5.92282
sequence = TGTTGCGATATGCAACA

Gene: DVU3303: ATP-dependent protease, response regulator receiver protein
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -154
score = 5.66558
sequence = TGTTGCAAAGTGCAACG

Site:
position = -76
score = 5.71354
sequence = CGTTGCGAAATGCAACG

Gene: DvMF_2107: ATP-dependent protease, response regulator receiver protein
 
Lawsonia intracellularis PHE/MN1-00
ATP-dependent protease, response regulator receiver protein
DVU3304
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_2667: integral membrane sensor signal transduction histidine kinase
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1

Gene: DMR_10790: integral membrane sensor signal transduction histidine kinase
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_0386: integral membrane sensor signal transduction histidine kinase
 
Desulfovibrio vulgaris Hildenborough

Gene: null: integral membrane sensor signal transduction histidine kinase
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_2108: integral membrane sensor signal transduction histidine kinase
 
Lawsonia intracellularis PHE/MN1-00
integral membrane sensor signal transduction histidine kinase
DVU3305
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_0701: two component, sigma54 specific, transcriptional regulator, Fis family
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_2666: two component, sigma54 specific, transcriptional regulator, Fis family
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1

Gene: DMR_10800: two component, sigma54 specific, transcriptional regulator, Fis family
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_0385: two component, sigma54 specific, transcriptional regulator, Fis family
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU3305: two component, sigma54 specific, transcriptional regulator, Fis family
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_2109: two component, sigma54 specific, transcriptional regulator, Fis family
 
Lawsonia intracellularis PHE/MN1-00
two component, sigma54 specific, transcriptional regulator, Fis family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
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