Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog HTCS_Hya - Bacteroidaceae

Properties
Regulator type: Transcription factor
Regulator family: [Other]
Regulation mode:
Biological process: Hyaluronan utilization; Chondroitin sulphate utilization
Effector: Hyaluronan; Chondroitin sulphate
Phylum: Bacteroidetes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 13 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacteroides cellulosilyticus DSM 14838 4 2
Bacteroides coprophilus DSM 18228
Bacteroides dorei DSM 17855
Bacteroides eggerthii DSM 20697 3 2
Bacteroides fragilis NCTC 9343
Bacteroides ovatus ATCC 8483 4 2
Bacteroides plebeius DSM 17135 5 1
Bacteroides stercoris ATCC 43183 6 3
Bacteroides thetaiotaomicron VPI-5482 6 2
Bacteroides uniformis ATCC 8492 2 1
Bacteroides vulgatus ATCC 8482
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
susC_Nan-6
 
Bacteroides cellulosilyticus DSM 14838
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483
 
Bacteroides plebeius DSM 17135
*
Bacteroides stercoris ATCC 43183

Site:
position = -137
score = 7.73414
sequence = TGTACAATATC-(10)-CGGACAATTAG

Gene: BACSTE_02458: TonB-dependent outer membrane transporter of sialic acid oligomers
 
Bacteroides thetaiotaomicron VPI-5482
*
Bacteroides uniformis ATCC 8492

Site:
position = -140
score = 8.32516
sequence = TGTACGAATTC-(10)-CGAACTATTAA

Gene: BACUNI_01022: TonB-dependent outer membrane transporter of sialic acid oligomers
 
Bacteroides vulgatus ATCC 8482
TonB-dependent outer membrane transporter of sialic acid oligomers
susD_Nan-6
 
Bacteroides cellulosilyticus DSM 14838
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483
 
Bacteroides plebeius DSM 17135
 
Bacteroides stercoris ATCC 43183

Gene: BACSTE_02457: Outer membrane polysaccharide binding protein for sialic acid oligomers
 
Bacteroides thetaiotaomicron VPI-5482
 
Bacteroides uniformis ATCC 8492

Gene: BACUNI_01023: Outer membrane polysaccharide binding protein for sialic acid oligomers
 
Bacteroides vulgatus ATCC 8482
Outer membrane polysaccharide binding protein for sialic acid oligomers
 
CRON 2.
susC_Hya-1
*
Bacteroides cellulosilyticus DSM 14838

Site:
position = -132
score = 8.26487
sequence = TGTACAAATTC-(10)-CGAACTATTAA

Gene: BACCELL_01637: TonB-dependent outer membrane transporter of hyaluronan oligomers
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
*
Bacteroides eggerthii DSM 20697

Site:
position = -129
score = 7.68629
sequence = TGTACAAAATT-(10)-CGAACGATTAC

Gene: BACEGG_03393: TonB-dependent outer membrane transporter of hyaluronan oligomers
 
Bacteroides fragilis NCTC 9343
*
Bacteroides ovatus ATCC 8483

Site:
position = -139
score = 8.64293
sequence = TGTATGATTTT-(10)-TGAATAATTCT

Gene: BACOVA_01998: TonB-dependent outer membrane transporter of hyaluronan oligomers
*
Bacteroides plebeius DSM 17135

Site:
position = -86
score = 7.47189
sequence = TGAACTATTTT-(10)-TCTATAATAAA

Gene: BACPLE_00367: TonB-dependent outer membrane transporter of hyaluronan oligomers
*
Bacteroides stercoris ATCC 43183

Site:
position = -94
score = 8.25811
sequence = TGTATGAATTT-(10)-TGGACAATTAC

Gene: BACSTE_02277: TonB-dependent outer membrane transporter of hyaluronan oligomers
*
Bacteroides thetaiotaomicron VPI-5482

Site:
position = -140
score = 8.73138
sequence = TGTATTATTTT-(10)-TGAATAATTCT

Gene: BT3332: TonB-dependent outer membrane transporter of hyaluronan oligomers
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482
TonB-dependent outer membrane transporter of hyaluronan oligomers
susD_Hya-1
 
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_01638: Outer membrane polysaccharide binding protein for hyaluronan oligomers
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697

Gene: BACEGG_03392: Outer membrane polysaccharide binding protein for hyaluronan oligomers
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483

Gene: BACOVA_01999: Outer membrane polysaccharide binding protein for hyaluronan oligomers
 
Bacteroides plebeius DSM 17135

Gene: BACPLE_00366: Outer membrane polysaccharide binding protein for hyaluronan oligomers
 
Bacteroides stercoris ATCC 43183

Gene: BACSTE_02278: Outer membrane polysaccharide binding protein for hyaluronan oligomers
 
Bacteroides thetaiotaomicron VPI-5482

Gene: BT3331: Outer membrane polysaccharide binding protein for hyaluronan oligomers
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482
Outer membrane polysaccharide binding protein for hyaluronan oligomers
hyaG
 
Bacteroides cellulosilyticus DSM 14838
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483

Gene: BACOVA_02000: Endoglucanase (EC 3.2.1.4)
 
Bacteroides plebeius DSM 17135

Gene: BACPLE_00365: Endoglucanase (EC 3.2.1.4)
 
Bacteroides stercoris ATCC 43183
 
Bacteroides thetaiotaomicron VPI-5482

Gene: BT3330: Endoglucanase (EC 3.2.1.4)
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482
Endoglucanase (EC 3.2.1.4)
hyaL
 
Bacteroides cellulosilyticus DSM 14838
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483
 
Bacteroides plebeius DSM 17135

Gene: BACPLE_00364: Pectate lyase (EC 4.2.2.2)
 
Bacteroides stercoris ATCC 43183
 
Bacteroides thetaiotaomicron VPI-5482

Gene: BT3329: Pectate lyase (EC 4.2.2.2)
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482
Pectate lyase (EC 4.2.2.2)
BACPLE_00363
 
Bacteroides cellulosilyticus DSM 14838
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483
 
Bacteroides plebeius DSM 17135

Gene: BACPLE_00363: Predicted envelope glycoprotein
 
Bacteroides stercoris ATCC 43183
 
Bacteroides thetaiotaomicron VPI-5482
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482
Predicted envelope glycoprotein
hyaB
 
Bacteroides cellulosilyticus DSM 14838
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483
 
Bacteroides plebeius DSM 17135
 
Bacteroides stercoris ATCC 43183
 
Bacteroides thetaiotaomicron VPI-5482

Gene: BT3328: Hyaluronate lyase (EC 4.2.2.19)
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482
Hyaluronate lyase (EC 4.2.2.19)
csuB
 
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_01639: Chondroitin sulfate ABC exolyase
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697

Gene: BACEGG_03390: Chondroitin sulfate ABC exolyase
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483

Gene: BACOVA_01967: Chondroitin sulfate ABC exolyase
 
Bacteroides plebeius DSM 17135
 
Bacteroides stercoris ATCC 43183

Gene: BACSTE_02279: Chondroitin sulfate ABC exolyase
 
Bacteroides thetaiotaomicron VPI-5482

Gene: BT3350: Chondroitin sulfate ABC exolyase
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482
Chondroitin sulfate ABC exolyase
 
CRON 3.
hyaS
*
Bacteroides cellulosilyticus DSM 14838

Site:
position = -98
score = 8.1951
sequence = TGTACGTTTTT-(10)-TGTACTCTACT

Gene: BACCELL_01636: Arylsulfatase C (EC 3.1.6.1)
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
*
Bacteroides eggerthii DSM 20697

Site:
position = -98
score = 7.83483
sequence = TGGACTTTTCA-(10)-TGTACTATTCT

Gene: BACEGG_03395: Arylsulfatase C (EC 3.1.6.1)
 
Bacteroides fragilis NCTC 9343
*
Bacteroides ovatus ATCC 8483

Site:
position = -100
score = 8.62924
sequence = TGTACTATTTT-(10)-TGTACATTCCT

Gene: BACOVA_01997: Arylsulfatase C (EC 3.1.6.1)
 
Bacteroides plebeius DSM 17135

Gene: BACPLE_00710: Arylsulfatase C (EC 3.1.6.1)
*
Bacteroides stercoris ATCC 43183

Site:
position = -98
score = 7.95736
sequence = TGTACTTTTTA-(10)-TGTACTCTTTT

Gene: BACSTE_02459: Arylsulfatase C (EC 3.1.6.1)
*
Bacteroides thetaiotaomicron VPI-5482

Site:
position = -98
score = 8.28442
sequence = TGGACTATTTT-(10)-TGTACATTCCT

Gene: BT3333: Arylsulfatase C (EC 3.1.6.1)
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482
Arylsulfatase C (EC 3.1.6.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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