Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog HTCS_Ara-2 - Bacteroidaceae

Properties
Regulator type: Transcription factor
Regulator family: [Other]
Regulation mode: activator (repressor)
Biological process: Arabinan utilization
Effector: Pectic galactan
Phylum: Bacteroidetes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 11 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacteroides cellulosilyticus DSM 14838 6 1
Bacteroides coprophilus DSM 18228
Bacteroides dorei DSM 17855 5 1
Bacteroides eggerthii DSM 20697
Bacteroides fragilis NCTC 9343
Bacteroides ovatus ATCC 8483 5 3
Bacteroides plebeius DSM 17135 6 2
Bacteroides stercoris ATCC 43183
Bacteroides thetaiotaomicron VPI-5482 6 3
Bacteroides uniformis ATCC 8492
Bacteroides vulgatus ATCC 8482 5 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
BVU_0840
*
Bacteroides cellulosilyticus DSM 14838

Site:
position = -132
score = 9.78853
sequence = TGCAAGATTT-(12)-TGCAAGATTT

Gene: BACCELL_01905: Conserved hypothetical protein, presumably involved in arabinogalactan utilization
 
Bacteroides coprophilus DSM 18228
*
Bacteroides dorei DSM 17855

Site:
position = -133
score = 9.78853
sequence = TGCAAGATTT-(12)-TGCAAGATTT

Gene: BACDOR_04891: Conserved hypothetical protein, presumably involved in arabinogalactan utilization
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483
*
Bacteroides plebeius DSM 17135

Site:
position = -107
score = 9.11537
sequence = TGAATGATTT-(12)-TGCATGATGT

Gene: BACPLE_00181: Conserved hypothetical protein, presumably involved in arabinogalactan utilization
 
Bacteroides stercoris ATCC 43183
 
Bacteroides thetaiotaomicron VPI-5482
 
Bacteroides uniformis ATCC 8492

Gene: BACUNI_03754: Conserved hypothetical protein, presumably involved in arabinogalactan utilization
*
Bacteroides vulgatus ATCC 8482

Site:
position = -133
score = 9.78853
sequence = TGCAAGATTT-(12)-TGCAAGATTT

Gene: BVU_0840: Conserved hypothetical protein, presumably involved in arabinogalactan utilization
Conserved hypothetical protein, presumably involved in arabinogalactan utilization
susC_Ara-6
 
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_01906: TonB-dependent outer membrane transporter of arabinan oligosaccharides
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855

Gene: BACDOR_04892: TonB-dependent outer membrane transporter of arabinan oligosaccharides
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483
 
Bacteroides plebeius DSM 17135

Gene: BACPLE_00180: TonB-dependent outer membrane transporter of arabinan oligosaccharides
 
Bacteroides stercoris ATCC 43183
 
Bacteroides thetaiotaomicron VPI-5482
 
Bacteroides uniformis ATCC 8492

Gene: BACUNI_03753: TonB-dependent outer membrane transporter of arabinan oligosaccharides
 
Bacteroides vulgatus ATCC 8482

Gene: BVU_0841: TonB-dependent outer membrane transporter of arabinan oligosaccharides
TonB-dependent outer membrane transporter of arabinan oligosaccharides
susC_Ara-6
 
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_01907: Outer membrane polysaccharide binding protein for arabinan oligosaccharides
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855

Gene: BACDOR_04893: Outer membrane polysaccharide binding protein for arabinan oligosaccharides
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483
 
Bacteroides plebeius DSM 17135

Gene: BACPLE_00179: Outer membrane polysaccharide binding protein for arabinan oligosaccharides
 
Bacteroides stercoris ATCC 43183
 
Bacteroides thetaiotaomicron VPI-5482
 
Bacteroides uniformis ATCC 8492

Gene: BACUNI_03752: Outer membrane polysaccharide binding protein for arabinan oligosaccharides
 
Bacteroides vulgatus ATCC 8482

Gene: BVU_0842: Outer membrane polysaccharide binding protein for arabinan oligosaccharides
Outer membrane polysaccharide binding protein for arabinan oligosaccharides
BVU_0843
 
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_01908: Predicted endo-beta-1,6-galactanase
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855

Gene: BACDOR_04894: Predicted endo-beta-1,6-galactanase
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483
 
Bacteroides plebeius DSM 17135

Gene: BACPLE_00178: Predicted endo-beta-1,6-galactanase
 
Bacteroides stercoris ATCC 43183
 
Bacteroides thetaiotaomicron VPI-5482
 
Bacteroides uniformis ATCC 8492

Gene: BACUNI_03751: Predicted endo-beta-1,6-galactanase
 
Bacteroides vulgatus ATCC 8482

Gene: BVU_0843: Predicted endo-beta-1,6-galactanase
Predicted endo-beta-1,6-galactanase
bgaL
 
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_01909: Beta-galactosidase
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483
 
Bacteroides plebeius DSM 17135

Gene: BACPLE_00177: Beta-galactosidase
 
Bacteroides stercoris ATCC 43183
 
Bacteroides thetaiotaomicron VPI-5482
 
Bacteroides uniformis ATCC 8492

Gene: BACUNI_03750: Beta-galactosidase
 
Bacteroides vulgatus ATCC 8482
Beta-galactosidase
abnX
 
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_01910: Putabtive arabinosidase, GH30 family
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855

Gene: BACDOR_04895: Putabtive arabinosidase, GH30 family
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
*
Bacteroides ovatus ATCC 8483

Site:
position = -50
score = 7.97598
sequence = TGTATGTTTT-(11)-TGTGTGATTT

Gene: BACOVA_02661: Putabtive arabinosidase, GH30 family
 
Bacteroides plebeius DSM 17135
 
Bacteroides stercoris ATCC 43183
*
Bacteroides thetaiotaomicron VPI-5482

Site:
position = -105
score = 7.95405
sequence = TGCAAGATTT-(11)-TGGTCGTTTT

Gene: BT3043: Putabtive arabinosidase, GH30 family
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482

Gene: BVU_0844: Putabtive arabinosidase, GH30 family
Putabtive arabinosidase, GH30 family
 
CRON 2.
susC_Ara-5
 
Bacteroides cellulosilyticus DSM 14838
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
*
Bacteroides ovatus ATCC 8483

Site:
position = -113
score = 9.73876
sequence = TGCATGATTT-(12)-TGCATGATTT

Gene: BACOVA_02665: TonB-dependent outer membrane transporter of arabinan oligosaccharideshypothetical protein
 
Bacteroides plebeius DSM 17135
 
Bacteroides stercoris ATCC 43183
 
Bacteroides thetaiotaomicron VPI-5482
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482
TonB-dependent outer membrane transporter of arabinan oligosaccharideshypothetical protein
susD_Ara-5
 
Bacteroides cellulosilyticus DSM 14838
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483

Gene: BACOVA_02664: Outer membrane polysaccharide binding protein for arabinan oligosaccharides
 
Bacteroides plebeius DSM 17135
 
Bacteroides stercoris ATCC 43183
 
Bacteroides thetaiotaomicron VPI-5482
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482
Outer membrane polysaccharide binding protein for arabinan oligosaccharides
BACOVA_02663
 
Bacteroides cellulosilyticus DSM 14838
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483

Gene: BACOVA_02663: Hypothetical protein, presumably involved in arabinan utilization
 
Bacteroides plebeius DSM 17135
 
Bacteroides stercoris ATCC 43183
 
Bacteroides thetaiotaomicron VPI-5482
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482
Hypothetical protein, presumably involved in arabinan utilization
 
CRON 3.
sbp_Ara-4
 
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_01899: Six-beta-propeller protein, cell surface exposed, putatively involved in arabinan binding
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483
 
Bacteroides plebeius DSM 17135
 
Bacteroides stercoris ATCC 43183
*
Bacteroides thetaiotaomicron VPI-5482

Site:
position = -262
score = 8.98743
sequence = TGAATGATTC-(11)-TGAATGATTT

Gene: BT3047: Six-beta-propeller protein, cell surface exposed, putatively involved in arabinan binding
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482
Six-beta-propeller protein, cell surface exposed, putatively involved in arabinan binding
susC_Ara-4
 
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_01900: TonB-dependent outer membrane transporter of arabinan oligosaccharides
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483
 
Bacteroides plebeius DSM 17135
 
Bacteroides stercoris ATCC 43183
 
Bacteroides thetaiotaomicron VPI-5482

Gene: BT3046: TonB-dependent outer membrane transporter of arabinan oligosaccharides
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482
TonB-dependent outer membrane transporter of arabinan oligosaccharides
susD_Ara-4
 
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_01901: Outer membrane polysaccharide binding protein for arabinan oligosaccharides
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483
 
Bacteroides plebeius DSM 17135
 
Bacteroides stercoris ATCC 43183
 
Bacteroides thetaiotaomicron VPI-5482

Gene: BT3045: Outer membrane polysaccharide binding protein for arabinan oligosaccharides
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482
Outer membrane polysaccharide binding protein for arabinan oligosaccharides
BT3044
 
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_01902: Hypothetical protein, presumably involved in arabinan utilization
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483
 
Bacteroides plebeius DSM 17135
 
Bacteroides stercoris ATCC 43183
 
Bacteroides thetaiotaomicron VPI-5482

Gene: BT3044: Hypothetical protein, presumably involved in arabinan utilization
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482
Hypothetical protein, presumably involved in arabinan utilization
 
CRON 4.
HTCS_Ara-2
 
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_01904: Arabinan utilization hybrid two-component system, HTH AraC family
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855

Gene: BACDOR_04890: Arabinan utilization hybrid two-component system, HTH AraC family
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
*
Bacteroides ovatus ATCC 8483

Site:
position = -76
score = 8.51453
sequence = TGAACGATTT-(12)-TAAAATATTT

Gene: BACOVA_02667: Arabinan utilization hybrid two-component system, HTH AraC family
*
Bacteroides plebeius DSM 17135

Site:
position = -56
score = 6.77854
sequence = TGTATGATTT-(12)-TTCAATAAAT

Gene: BACPLE_00182: Arabinan utilization hybrid two-component system, HTH AraC family
 
Bacteroides stercoris ATCC 43183
*
Bacteroides thetaiotaomicron VPI-5482

Site:
position = -81
score = 8.92276
sequence = TGAATCATTT-(12)-TACAAGATTT

Gene: BT3049: Arabinan utilization hybrid two-component system, HTH AraC family
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482

Gene: BVU_0839: Arabinan utilization hybrid two-component system, HTH AraC family
Arabinan utilization hybrid two-component system, HTH AraC family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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