Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog TPP - Campylobacteraceae

Properties
Regulator type: RNA regulatory element
Name: TPP
RFAM: RF00059
Regulation mode:
Biological process: Riboflavin biosynthesis
Effector: Thiamine pyrophosphate
Phylum: Proteobacteria/Epsilon
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Campylobacter lari RM2100 5 2
Campylobacter upsaliensis RM3195 1 1
Campylobacter coli RM2228 1 1
Campylobacter jejuni subsp. jejuni NCTC 11168 1 1
Campylobacter rectus RM3267
Campylobacter curvus 525.92
Campylobacter concisus 13826
Campylobacter fetus subsp. fetus 82-40
Campylobacter hominis ATCC BAA-381
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
thiD
*
Campylobacter lari RM2100

Site:
position = -118
score = 22.4
sequence = TTTTAGCCAATGGGG...

Gene: Cla_1124: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Campylobacter upsaliensis RM3195

Gene: CUP0764: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Campylobacter coli RM2228

Gene: CCO1156: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Campylobacter jejuni subsp. jejuni NCTC 11168

Gene: Cj1082c: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Campylobacter rectus RM3267

Gene: CAMRE0001_1779: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Campylobacter curvus 525.92
 
Campylobacter concisus 13826

Gene: CCC13826_0361: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Campylobacter fetus subsp. fetus 82-40
 
Campylobacter hominis ATCC BAA-381

Gene: CHAB381_1498: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
Phosphomethylpyrimidine kinase (EC 2.7.4.7)
thiM
 
Campylobacter lari RM2100

Gene: Cla_1123: Hydroxyethylthiazole kinase (EC 2.7.1.50)
 
Campylobacter upsaliensis RM3195
 
Campylobacter coli RM2228
 
Campylobacter jejuni subsp. jejuni NCTC 11168
 
Campylobacter rectus RM3267
 
Campylobacter curvus 525.92
 
Campylobacter concisus 13826
 
Campylobacter fetus subsp. fetus 82-40
 
Campylobacter hominis ATCC BAA-381
Hydroxyethylthiazole kinase (EC 2.7.1.50)
thiE
 
Campylobacter lari RM2100

Gene: Cla_1122: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Campylobacter upsaliensis RM3195

Gene: CUP0765: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Campylobacter coli RM2228

Gene: CCO1155: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Campylobacter jejuni subsp. jejuni NCTC 11168

Gene: Cj1081c: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Campylobacter rectus RM3267
 
Campylobacter curvus 525.92
 
Campylobacter concisus 13826
 
Campylobacter fetus subsp. fetus 82-40
 
Campylobacter hominis ATCC BAA-381
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
hemD
 
Campylobacter lari RM2100

Gene: Cla_1121: Uroporphyrinogen-III synthase (EC 4.2.1.75)
 
Campylobacter upsaliensis RM3195

Gene: CUP0766: Uroporphyrinogen-III synthase (EC 4.2.1.75)
 
Campylobacter coli RM2228

Gene: CCO1154: Uroporphyrinogen-III synthase (EC 4.2.1.75)
 
Campylobacter jejuni subsp. jejuni NCTC 11168

Gene: Cj1080c: Uroporphyrinogen-III synthase (EC 4.2.1.75)
 
Campylobacter rectus RM3267

Gene: CAMRE0001_1487: Uroporphyrinogen-III synthase (EC 4.2.1.75)
 
Campylobacter curvus 525.92

Gene: CCV52592_0948: Uroporphyrinogen-III synthase (EC 4.2.1.75)
 
Campylobacter concisus 13826

Gene: CCC13826_0493: Uroporphyrinogen-III synthase (EC 4.2.1.75)
 
Campylobacter fetus subsp. fetus 82-40

Gene: CFF8240_1262: Uroporphyrinogen-III synthase (EC 4.2.1.75)
 
Campylobacter hominis ATCC BAA-381

Gene: CHAB381_1483: Uroporphyrinogen-III synthase (EC 4.2.1.75)
Uroporphyrinogen-III synthase (EC 4.2.1.75)
 
CRON 2.
thiC
*
Campylobacter lari RM2100

Site:
position = -155
score = 53.71
sequence = TTGCATAAATGACGG...

Gene: Cla_1025: Thiamine biosynthesis protein ThiC
*
Campylobacter upsaliensis RM3195

Site:
position = -146
score = 55.06
sequence = ACATAAATGACGGGA...

Gene: CUP0321: Thiamine biosynthesis protein ThiC
*
Campylobacter coli RM2228

Site:
position = -150
score = 54.75
sequence = AAACATAAATGACGG...

Gene: CCO0544: Thiamine biosynthesis protein ThiC
*
Campylobacter jejuni subsp. jejuni NCTC 11168

Site:
position = -160
score = 61.07
sequence = ACATAAATGACGGGA...

Gene: Cj0453: Thiamine biosynthesis protein ThiC
 
Campylobacter rectus RM3267

Gene: CAMRE0001_1204: Thiamine biosynthesis protein ThiC
 
Campylobacter curvus 525.92
 
Campylobacter concisus 13826

Gene: CCC13826_1468: Thiamine biosynthesis protein ThiC
 
Campylobacter fetus subsp. fetus 82-40

Gene: CFF8240_0410: Thiamine biosynthesis protein ThiC
 
Campylobacter hominis ATCC BAA-381

Gene: CHAB381_0672: Thiamine biosynthesis protein ThiC
Thiamine biosynthesis protein ThiC
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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