Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog FMN - Bifidobacteriaceae

Properties
Regulator type: RNA regulatory element
Name: FMN
RFAM: RF00050
Regulation mode:
Biological process: Riboflavin biosynthesis
Effector: Flavin mononucleotide
Phylum: Actinobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bifidobacterium angulatum DSM 20098 2 1
Bifidobacterium bifidum NCIMB 41171 2 1
Gardnerella vaginalis 409-05 2 1
Bifidobacterium breve DSM 20213 2 1
Bifidobacterium adolescentis ATCC 15703 2 1
Bifidobacterium longum NCC2705 2 1
Bifidobacterium gallicum DSM 20093 2 1
Bifidobacterium dentium Bd1 2 1
Bifidobacterium animalis subsp. lactis AD011 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ribU
*
Bifidobacterium angulatum DSM 20098

Site:
position = -177
score = 83.43
sequence = CCGTAAGTTTCAGGG...

Gene: BIFANG_00999: Substrate-specific component RibU of riboflavin ECF transporter
*
Bifidobacterium bifidum NCIMB 41171

Site:
position = -159
score = 73.1
sequence = AAGCAAGTTTCAGGG...

Gene: BbifN4_010100002939: Substrate-specific component RibU of riboflavin ECF transporter
*
Gardnerella vaginalis 409-05

Site:
position = -152
score = 97.33
sequence = GTTAGTTTCAGGGAA...

Gene: HMPREF0424_0823: Substrate-specific component RibU of riboflavin ECF transporter
*
Bifidobacterium breve DSM 20213

Site:
position = -138
score = 88.19
sequence = CTGTCAGTTTCAGGG...

Gene: BIFBRE_00572: Substrate-specific component RibU of riboflavin ECF transporter
*
Bifidobacterium adolescentis ATCC 15703

Site:
position = -222
score = 81.02
sequence = AAGCAAGTTTCAGGG...

Gene: BAD_0962: Substrate-specific component RibU of riboflavin ECF transporter
*
Bifidobacterium longum NCC2705

Site:
position = -159
score = 88.65
sequence = CTGTCAGTTTCAGGG...

Gene: BL0044: Substrate-specific component RibU of riboflavin ECF transporter
*
Bifidobacterium gallicum DSM 20093

Site:
position = -137
score = 81.84
sequence = CATAGTTTCAGGGAA...

Gene: BIFGAL_01827: Substrate-specific component RibU of riboflavin ECF transporter
*
Bifidobacterium dentium Bd1

Site:
position = -157
score = 76.81
sequence = ACAAGTTTCAGGGAA...

Gene: BDP_1337: Substrate-specific component RibU of riboflavin ECF transporter
*
Bifidobacterium animalis subsp. lactis AD011

Site:
position = -148
score = 75.02
sequence = AGTGCAATTTCAGGG...

Gene: BLA_1217: Substrate-specific component RibU of riboflavin ECF transporter
Substrate-specific component RibU of riboflavin ECF transporter
ecfAAT
 
Bifidobacterium angulatum DSM 20098

Gene: BIFANG_00998: Duplicated ATPase component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter
 
Bifidobacterium bifidum NCIMB 41171

Gene: BbifN4_010100002934: Duplicated ATPase component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter
 
Gardnerella vaginalis 409-05

Gene: HMPREF0424_0824: Duplicated ATPase component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter
 
Bifidobacterium breve DSM 20213

Gene: BIFBRE_00571: Duplicated ATPase component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter
 
Bifidobacterium adolescentis ATCC 15703

Gene: BAD_0961: Duplicated ATPase component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter
 
Bifidobacterium longum NCC2705

Gene: BL0043: Duplicated ATPase component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter
 
Bifidobacterium gallicum DSM 20093

Gene: BIFGAL_01828: Duplicated ATPase component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter
 
Bifidobacterium dentium Bd1

Gene: BDP_1338: Duplicated ATPase component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter
 
Bifidobacterium animalis subsp. lactis AD011

Gene: BLA_1216: Duplicated ATPase component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter
Duplicated ATPase component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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