Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog FMN - Clostridia-3

Properties
Regulator type: RNA regulatory element
Name: FMN
RFAM: RF00050
Regulation mode:
Biological process: Riboflavin biosynthesis
Effector: Flavin mononucleotide
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacteroides pectinophilus ATCC 43243 1 1
Blautia hansenii DSM 20583 5 2
Bryantella formatexigens DSM 14469 1 1
Dorea longicatena DSM 13814 5 2
Dorea formicigenerans ATCC 27755 5 2
Ruminococcus gnavus ATCC 29149 1 1
Ruminococcus lactaris ATCC 29176 1 1
Roseburia intestinalis L1-82 2 2
Eubacterium rectale ATCC 33656 5 2
Eubacterium eligens ATCC 27750 4 1
Clostridium scindens ATCC 35704 2 2
Clostridium nexile DSM 1787 1 1
Clostridium bolteae ATCC BAA-613 5 2
Clostridiales bacterium 1_7_47_FAA 5 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ribD
 
Bacteroides pectinophilus ATCC 43243
*
Blautia hansenii DSM 20583

Site:
position = -289
score = 119.85
sequence = ATAAAATCTTCAGGG...

Gene: BLAHAN_02906: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
 
Bryantella formatexigens DSM 14469
*
Dorea longicatena DSM 13814

Site:
position = -280
score = 111.5
sequence = ACGAAATCTTCAGGG...

Gene: DORLON_02764: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Dorea formicigenerans ATCC 27755

Site:
position = -288
score = 113.03
sequence = GAAATCTTCAGGGCA...

Gene: DORFOR_00288: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
 
Ruminococcus gnavus ATCC 29149
 
Ruminococcus lactaris ATCC 29176
*
Roseburia intestinalis L1-82

Site:
position = -384
score = 114.49
sequence = ATGATCTTCAGGGCA...

Gene: ROSINTL182_02839: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Eubacterium rectale ATCC 33656

Site:
position = -345
score = 107.53
sequence = AATTATTCTTCAGGG...

Gene: EUBREC_3132: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Eubacterium eligens ATCC 27750

Site:
position = -847
score = 109.32
sequence = TATGGAACTTCAGGG...

Gene: EUBELI_20114: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
 
Clostridium scindens ATCC 35704
 
Clostridium nexile DSM 1787
*
Clostridium bolteae ATCC BAA-613

Site:
position = -688
score = 117.1
sequence = AATATCTTCAGGGCA...

Gene: CLOBOL_02805: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Clostridiales bacterium 1_7_47_FAA

Site:
position = -499
score = 113.67
sequence = AATATCTTCAGGGCA...

Gene: Cbac1_010100006733: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
ribE
 
Bacteroides pectinophilus ATCC 43243
 
Blautia hansenii DSM 20583

Gene: BLAHAN_02905: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Bryantella formatexigens DSM 14469
 
Dorea longicatena DSM 13814

Gene: DORLON_02763: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Dorea formicigenerans ATCC 27755

Gene: DORFOR_00289: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Ruminococcus gnavus ATCC 29149
 
Ruminococcus lactaris ATCC 29176
 
Roseburia intestinalis L1-82

Gene: ROSINTL182_02841: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Eubacterium rectale ATCC 33656

Gene: EUBREC_3131: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Eubacterium eligens ATCC 27750

Gene: EUBELI_20113: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Clostridium scindens ATCC 35704
 
Clostridium nexile DSM 1787
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_02806: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Clostridiales bacterium 1_7_47_FAA

Gene: Cbac1_010100006738: Riboflavin synthase alpha chain (EC 2.5.1.9)
Riboflavin synthase alpha chain (EC 2.5.1.9)
ribBA
 
Bacteroides pectinophilus ATCC 43243
 
Blautia hansenii DSM 20583

Gene: BLAHAN_02904: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Bryantella formatexigens DSM 14469
 
Dorea longicatena DSM 13814

Gene: DORLON_02762: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Dorea formicigenerans ATCC 27755

Gene: DORFOR_00290: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Ruminococcus gnavus ATCC 29149
 
Ruminococcus lactaris ATCC 29176
 
Roseburia intestinalis L1-82

Gene: ROSINTL182_02842: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Eubacterium rectale ATCC 33656

Gene: EUBREC_3130: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Eubacterium eligens ATCC 27750

Gene: EUBELI_20112: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Clostridium scindens ATCC 35704
 
Clostridium nexile DSM 1787
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_02807: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
 
Clostridiales bacterium 1_7_47_FAA

Gene: Cbac1_010100006743: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
ribH
 
Bacteroides pectinophilus ATCC 43243
 
Blautia hansenii DSM 20583

Gene: BLAHAN_02903: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Bryantella formatexigens DSM 14469
 
Dorea longicatena DSM 13814

Gene: DORLON_02761: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Dorea formicigenerans ATCC 27755

Gene: DORFOR_00291: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Ruminococcus gnavus ATCC 29149
 
Ruminococcus lactaris ATCC 29176
 
Roseburia intestinalis L1-82

Gene: ROSINTL182_02843: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Eubacterium rectale ATCC 33656

Gene: EUBREC_3129: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Eubacterium eligens ATCC 27750

Gene: EUBELI_20111: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Clostridium scindens ATCC 35704
 
Clostridium nexile DSM 1787
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_02808: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Clostridiales bacterium 1_7_47_FAA

Gene: Cbac1_010100006748: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
CRON 2.
ribU
*
Bacteroides pectinophilus ATCC 43243

Site:
position = -213
score = 64.11
sequence = GAATGAACGGCAGAT...

Gene: BACPEC_00730: Substrate-specific component RibU of riboflavin ECF transporter
*
Blautia hansenii DSM 20583

Site:
position = -211
score = 117.85
sequence = AGAAATTCTTCGGGG...

Gene: BLAHAN_01242: Substrate-specific component RibU of riboflavin ECF transporter
*
Bryantella formatexigens DSM 14469

Site:
position = -202
score = 114.9
sequence = GAAATCTTCGGGGCA...

Gene: BRYFOR_03730: Substrate-specific component RibU of riboflavin ECF transporter
*
Dorea longicatena DSM 13814

Site:
position = -315
score = 101.27
sequence = AGATTCTTCGGGGCA...

Gene: DORLON_02252: Substrate-specific component RibU of riboflavin ECF transporter
*
Dorea formicigenerans ATCC 27755

Site:
position = -348
score = 119.79
sequence = AGAGATTCTTCGGGG...

Gene: DORFOR_03135: Substrate-specific component RibU of riboflavin ECF transporter
*
Ruminococcus gnavus ATCC 29149

Site:
position = -272
score = 97.39
sequence = AATAAATCTTCGGGG...

Gene: RUMGNA_02978: Substrate-specific component RibU of riboflavin ECF transporter
*
Ruminococcus lactaris ATCC 29176

Site:
position = -312
score = 92.51
sequence = GTAATCTTCGGGGTC...

Gene: RUMLAC_02357: Substrate-specific component RibU of riboflavin ECF transporter
*
Roseburia intestinalis L1-82

Site:
position = -152
score = 88.51
sequence = TAATTCTTCGGGGCA...

Gene: ROSINTL182_01713: Substrate-specific component RibU of riboflavin ECF transporter
*
Eubacterium rectale ATCC 33656

Site:
position = -244
score = 110.32
sequence = GAATTCTTCAGGGCA...

Gene: EUBREC_0834: Substrate-specific component RibU of riboflavin ECF transporter
 
Eubacterium eligens ATCC 27750

Gene: EUBELI_20519: Substrate-specific component RibU of riboflavin ECF transporter
*2
Clostridium scindens ATCC 35704

Site:
position = -142
score = 109.59
sequence = AGAGATTCTTCGGGG...

Gene: CLOSCI_02146: Substrate-specific component RibU of riboflavin ECF transporter

Site:
position = -192
score = 91.41
sequence = GAAGTCTTTGTGGCA...

Gene: CLOSCI_02942: Substrate-specific component RibU of riboflavin ECF transporter
*
Clostridium nexile DSM 1787

Site:
position = -239
score = 113.38
sequence = GGATTCTTCGGGGCA...

Gene: CLONEX_02849: Substrate-specific component RibU of riboflavin ECF transporter
*
Clostridium bolteae ATCC BAA-613

Site:
position = -352
score = 114.43
sequence = TAAAGTTCTTCGGGG...

Gene: CLOBOL_02256: Substrate-specific component RibU of riboflavin ECF transporter
*
Clostridiales bacterium 1_7_47_FAA

Site:
position = -127
score = 108.14
sequence = ATAAGTTCTTCGGGG...

Gene: Cbac1_010100023592: Substrate-specific component RibU of riboflavin ECF transporter
Substrate-specific component RibU of riboflavin ECF transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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