Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog TPP - Xanthomonadales

Properties
Regulator type: RNA regulatory element
Name: TPP
RFAM: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Phylum: Proteobacteria/Gamma
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Xylella fastidiosa 9a5c 1 1
Xanthomonas axonopodis pv. citri str. 306 1 1
Xanthomonas campestris pv. campestris str. ATCC 33913 1 1
Stenotrophomonas maltophilia K279a 3 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
thiC
*
Xylella fastidiosa 9a5c

Site:
position = -170
score = 54.07
sequence = CTTTGAAGCGGGGGT...

Gene: XF1888: Thiamin biosynthesis protein ThiC
*
Xanthomonas axonopodis pv. citri str. 306

Site:
position = -190
score = 59.9
sequence = GCCGCCGAAGTGGGG...

Gene: XAC3447: Thiamin biosynthesis protein ThiC
*
Xanthomonas campestris pv. campestris str. ATCC 33913

Site:
position = -214
score = 58.71
sequence = GCCGCCGAAGTGGGG...

Gene: XCC3319: Thiamin biosynthesis protein ThiC
*
Stenotrophomonas maltophilia K279a

Site:
position = -184
score = 59.97
sequence = CACCAAGAAGCGGGG...

Gene: Smlt3909: Thiamin biosynthesis protein ThiC
Thiamin biosynthesis protein ThiC
 
CRON 2.
omp_thi
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC3529: Predicted thiamin-specific outer membrane transporter, TonB-dependent
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC0674: Predicted thiamin-specific outer membrane transporter, TonB-dependent
*
Stenotrophomonas maltophilia K279a

Site:
position = -168
score = 62.62
sequence = TCACCTGAAGCGGGG...

Gene: Smlt0190: Predicted thiamin-specific outer membrane transporter, TonB-dependent
Predicted thiamin-specific outer membrane transporter, TonB-dependent
pnuT
 
Xylella fastidiosa 9a5c
 
Xanthomonas axonopodis pv. citri str. 306

Gene: XAC3531: Predicted thiamin transporter PnuT
 
Xanthomonas campestris pv. campestris str. ATCC 33913

Gene: XCC0673: Predicted thiamin transporter PnuT
 
Stenotrophomonas maltophilia K279a

Gene: Smlt0189: Predicted thiamin transporter PnuT
Predicted thiamin transporter PnuT
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD