Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog TPP - Moraxellaceae

Properties
Regulator type: RNA regulatory element
Name: TPP
RFAM: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Phylum: Proteobacteria/Gamma
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acinetobacter sp. ADP1 1 1
Acinetobacter baumannii AB0057 1 1
Psychrobacter arcticum 273-4 1 1
Psychrobacter sp. PRwf-1 4 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
thiM
 
Acinetobacter sp. ADP1
 
Acinetobacter baumannii AB0057
 
Psychrobacter arcticum 273-4
*
Psychrobacter sp. PRwf-1

Site:
position = -191
score = 69.05
sequence = TAAGTTATCACAGGG...

Gene: PsycPRwf_0830: Hydroxyethylthiazole kinase (EC 2.7.1.50)
Hydroxyethylthiazole kinase (EC 2.7.1.50)
thiE
 
Acinetobacter sp. ADP1
 
Acinetobacter baumannii AB0057
 
Psychrobacter arcticum 273-4
 
Psychrobacter sp. PRwf-1

Gene: PsycPRwf_0829: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiD
 
Acinetobacter sp. ADP1
 
Acinetobacter baumannii AB0057
 
Psychrobacter arcticum 273-4
 
Psychrobacter sp. PRwf-1

Gene: PsycPRwf_0828: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
CRON 2.
thiC
*
Acinetobacter sp. ADP1

Site:
position = -215
score = 69.07
sequence = TGCATGCTTGACGGA...

Gene: ACIAD0276: Thiamine biosynthesis protein ThiC
*
Acinetobacter baumannii AB0057

Site:
position = -225
score = 62.38
sequence = AAATCGCTTGACGGA...

Gene: AB57_0340: Thiamine biosynthesis protein ThiC
*
Psychrobacter arcticum 273-4

Site:
position = -364
score = 61.21
sequence = ACTGACAGACTCGGG...

Gene: Psyc_0086: Thiamine biosynthesis protein ThiC
*
Psychrobacter sp. PRwf-1

Site:
position = -426
score = 61.49
sequence = ATTAAGACTCGGGGT...

Gene: PsycPRwf_2272: Thiamine biosynthesis protein ThiC
Thiamine biosynthesis protein ThiC
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD