Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog FMN - Oceanospirillales/Alteromonadales

Properties
Regulator type: RNA regulatory element
Name: FMN
RFAM: RF00050
Regulation mode:
Biological process: Riboflavin biosynthesis
Effector: Flavin mononucleotide
Phylum: Proteobacteria/Gamma
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Hahella chejuensis KCTC 2396 1 1
Marinobacter aqueolei
Marinobacter sp. ELB17
Oceanobacter sp. RED65
Oceanospirillum sp. MED92
Marinomonas sp. MWYL1 2 2
Saccharophagus degradans 2-40
Teredinibacter turnerae T7901
Cellvibrio japonicus Ueda107
Chromohalobacter salexigens DSM 3043
Reinekea sp. MED297 1 1
Alcanivorax borkumensis SK2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
emrE
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
*
Marinomonas sp. MWYL1

Site:
position = -295
score = 106.5
sequence = TCGAACTTCGGGGCG...

Gene: Mmwyl1_0168: Multidrug resistance efflux transporter EmrE
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
*
Reinekea sp. MED297

Site:
position = -323
score = 25.09
sequence = GTTGTTTTTGTCAGG...

Gene: MED297_12482: Multidrug resistance efflux transporter EmrE
 
Alcanivorax borkumensis SK2
Multidrug resistance efflux transporter EmrE
 
CRON 2.
ribH
 
Hahella chejuensis KCTC 2396

Gene: HCH_05954: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Marinobacter aqueolei

Gene: Maqu_0845: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Marinobacter sp. ELB17

Gene: MELB17_19651: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Oceanobacter sp. RED65

Gene: RED65_16066: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Oceanospirillum sp. MED92

Gene: MED92_17858: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
*
Marinomonas sp. MWYL1

Site:
position = -284
score = 121.09
sequence = ACTTCGTTCTCGGGG...

Gene: Mmwyl1_1372: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Saccharophagus degradans 2-40

Gene: Sde_3455: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Teredinibacter turnerae T7901

Gene: TERTU_3701: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Cellvibrio japonicus Ueda107

Gene: CJA_2694: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_2583: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Reinekea sp. MED297

Gene: MED297_09511: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Alcanivorax borkumensis SK2

Gene: ABO_2171: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
CRON 3.
ribB
*
Hahella chejuensis KCTC 2396

Site:
position = -132
score = 116.76
sequence = AACTTATTCTCAGGG...

Gene: HCH_01388: 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12)
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD