Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog HTCS_Rgu-1 - Bacteroidaceae

Properties
Regulator type: Transcription factor
Regulator family: [Other]
Regulation mode: activator
Biological process: Rhamnogalacturonides utilization
Effector: Rhamogalacturonate oligosaccharides; Galacturonate oligosaccharides
Phylum: Bacteroidetes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 26 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacteroides cellulosilyticus DSM 14838 6 3
Bacteroides coprophilus DSM 18228
Bacteroides dorei DSM 17855 10 4
Bacteroides eggerthii DSM 20697 6 3
Bacteroides fragilis NCTC 9343
Bacteroides ovatus ATCC 8483 11 3
Bacteroides plebeius DSM 17135 4 2
Bacteroides stercoris ATCC 43183 5 2
Bacteroides thetaiotaomicron VPI-5482 16 5
Bacteroides uniformis ATCC 8492
Bacteroides vulgatus ATCC 8482 10 4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
susC_Rgu-1
*2
Bacteroides cellulosilyticus DSM 14838

Site:
position = -126
score = 9.01777
sequence = CAAAAAATACCA-(9)-CAGATATTACAC

Gene: BACCELL_03135: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides

Gene: BACCELL_03126: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
 
Bacteroides coprophilus DSM 18228
*
Bacteroides dorei DSM 17855

Site:
position = -124
score = 9.0316
sequence = TAATAAATCCAC-(9)-TAAAAACTACAC

Gene: BACDOR_03276: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
*
Bacteroides eggerthii DSM 20697

Site:
position = -127
score = 9.28353
sequence = CAAAAAGTACCA-(9)-CAAAAATTACAC

Gene: BACEGG_00870: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
 
Bacteroides fragilis NCTC 9343
*
Bacteroides ovatus ATCC 8483

Site:
position = -128
score = 9.53095
sequence = CAAAAAATACGA-(9)-CAAATATTGCAC

Gene: BACOVA_04911: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
 
Bacteroides plebeius DSM 17135

Gene: BACPLE_03439: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
 
Bacteroides stercoris ATCC 43183

Gene: BACSTE_03287: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
*
Bacteroides thetaiotaomicron VPI-5482

Site:
position = -127
score = 9.434
sequence = CAAAAAATACTA-(9)-CAAATATTACAC

Gene: BT4114: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
 
Bacteroides uniformis ATCC 8492
*
Bacteroides vulgatus ATCC 8482

Site:
position = -123
score = 9.0316
sequence = TAATAAATCCAC-(9)-TAAAAACTACAC

Gene: BVU_1799: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
susD_Rgu-1
 2
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_03134: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers

Gene: BACCELL_03127: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855

Gene: BACDOR_03275: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers
 
Bacteroides eggerthii DSM 20697

Gene: BACEGG_00869: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483

Gene: BACOVA_04910: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers
 
Bacteroides plebeius DSM 17135

Gene: BACPLE_03440: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers
 
Bacteroides stercoris ATCC 43183

Gene: BACSTE_03286: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers
 
Bacteroides thetaiotaomicron VPI-5482

Gene: BT4113: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482

Gene: BVU_1800: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers
Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers
BT4112
 
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_03133: Predicted pectin lyase
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697

Gene: BACEGG_00868: Predicted pectin lyase
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483

Gene: BACOVA_04909: Predicted pectin lyase
 
Bacteroides plebeius DSM 17135

Gene: BACPLE_03441: Predicted pectin lyase
 
Bacteroides stercoris ATCC 43183

Gene: BACSTE_03285: Predicted pectin lyase
 
Bacteroides thetaiotaomicron VPI-5482

Gene: BT4112: Predicted pectin lyase
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482
Predicted pectin lyase
pemC
 
Bacteroides cellulosilyticus DSM 14838
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483

Gene: BACOVA_04908: Pectinesterase (EC 3.1.1.11)
 
Bacteroides plebeius DSM 17135

Gene: BACPLE_03442: Pectinesterase (EC 3.1.1.11)
 
Bacteroides stercoris ATCC 43183

Gene: BACSTE_03284: Pectinesterase (EC 3.1.1.11)
 
Bacteroides thetaiotaomicron VPI-5482
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482
Pectinesterase (EC 3.1.1.11)
plyC1
 
Bacteroides cellulosilyticus DSM 14838
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 3
Bacteroides ovatus ATCC 8483

Gene: BACOVA_04907: Pectate lyase C

Gene: BACOVA_04906: Pectate lyase C

Gene: BACOVA_04905: Pectate lyase C
 2
Bacteroides plebeius DSM 17135

Gene: BACPLE_03443: Pectate lyase C

Gene: BACPLE_03444: Pectate lyase C
 3
Bacteroides stercoris ATCC 43183

Gene: BACSTE_03283: Pectate lyase C

Gene: BACSTE_03282: Pectate lyase C

Gene: BACSTE_03281: Pectate lyase C
*2
Bacteroides thetaiotaomicron VPI-5482

Site:
position = -119
score = 9.8102
sequence = CAAAAAATACAA-(9)-CAAATATTGCAC

Gene: BT4116: Pectate lyase C

Gene: BT4115: Pectate lyase C
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482
Pectate lyase C
 
CRON 2.
plyC4
 
Bacteroides cellulosilyticus DSM 14838
 
Bacteroides coprophilus DSM 18228
*
Bacteroides dorei DSM 17855

Site:
position = -106
score = 8.85205
sequence = TAAAATATACGA-(9)-CAAATATTACAA

Gene: BACDOR_03257: Pectate lyase C
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483
 
Bacteroides plebeius DSM 17135
 
Bacteroides stercoris ATCC 43183
 
Bacteroides thetaiotaomicron VPI-5482
 
Bacteroides uniformis ATCC 8492
*
Bacteroides vulgatus ATCC 8482

Site:
position = -106
score = 8.85205
sequence = TAAAATATACGA-(9)-CAAATATTACAA

Gene: BVU_1813: Pectate lyase C
Pectate lyase C
ytaP
 
Bacteroides cellulosilyticus DSM 14838
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855

Gene: BACDOR_03256: Predicted hydrolase
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483
 
Bacteroides plebeius DSM 17135
 
Bacteroides stercoris ATCC 43183
 
Bacteroides thetaiotaomicron VPI-5482
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482

Gene: BVU_1814: Predicted hydrolase
Predicted hydrolase
pemB
 
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_03123: Pectinesterase (EC 3.1.1.11)
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855

Gene: BACDOR_03255: Pectinesterase (EC 3.1.1.11)
 
Bacteroides eggerthii DSM 20697

Gene: BACEGG_00866: Pectinesterase (EC 3.1.1.11)
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483

Gene: BACOVA_04902: Pectinesterase (EC 3.1.1.11)
 
Bacteroides plebeius DSM 17135

Gene: BACPLE_03450: Pectinesterase (EC 3.1.1.11)
 
Bacteroides stercoris ATCC 43183

Gene: BACSTE_03301: Pectinesterase (EC 3.1.1.11)
 
Bacteroides thetaiotaomicron VPI-5482

Gene: BT4110: Pectinesterase (EC 3.1.1.11)
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482

Gene: BVU_1815: Pectinesterase (EC 3.1.1.11)
Pectinesterase (EC 3.1.1.11)
rhiN
*
Bacteroides cellulosilyticus DSM 14838

Site:
position = -106
score = 9.26705
sequence = TAAATAATGCAC-(9)-CGAAAAGTACAC

Gene: BACCELL_03119: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
 
Bacteroides coprophilus DSM 18228
*
Bacteroides dorei DSM 17855

Site:
position = -105
score = 9.4358
sequence = CAAATAATACAC-(9)-TGAAAAGTGCAC

Gene: BACDOR_03278: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
*
Bacteroides eggerthii DSM 20697

Site:
position = -107
score = 9.72057
sequence = CAAAAAATGCAC-(9)-CAAAAAATGCAC

Gene: BACEGG_00863: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
 
Bacteroides fragilis NCTC 9343
*
Bacteroides ovatus ATCC 8483

Site:
position = -155
score = 8.92159
sequence = CAAAAAATGCAC-(9)-TAAAAAATCCCA

Gene: BACOVA_04900: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
*
Bacteroides plebeius DSM 17135

Site:
position = -108
score = 7.72838
sequence = CAATTTTTATAC-(9)-TGAAAACTACAC

Gene: BACPLE_03451: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
*
Bacteroides stercoris ATCC 43183

Site:
position = -107
score = 9.81701
sequence = CAAAAAATGCAC-(9)-CAAAAAGTGCAC

Gene: BACSTE_03304: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
*
Bacteroides thetaiotaomicron VPI-5482

Site:
position = -105
score = 9.08411
sequence = CAAAAAATACAC-(9)-TAAAAAATCCCA

Gene: BT4108: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
 
Bacteroides uniformis ATCC 8492
*
Bacteroides vulgatus ATCC 8482

Site:
position = -105
score = 9.4358
sequence = CAAATAATACAC-(9)-TGAAAAGTGCAC

Gene: BVU_1797: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
rgaE
 
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_03120: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855

Gene: BACDOR_03277: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
 
Bacteroides eggerthii DSM 20697

Gene: BACEGG_00864: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483

Gene: BACOVA_04901: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
 
Bacteroides plebeius DSM 17135
 
Bacteroides stercoris ATCC 43183

Gene: BACSTE_03303: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
 
Bacteroides thetaiotaomicron VPI-5482

Gene: BT4109: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482

Gene: BVU_1798: Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
Rhamnogalacturonan acetylesterase (EC 3.1.1.86)
BACCELL_03124
 
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_03124: Predicted deacetylase
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483
 
Bacteroides plebeius DSM 17135

Gene: BACPLE_03449: Predicted deacetylase
 
Bacteroides stercoris ATCC 43183

Gene: BACSTE_03300: Predicted deacetylase
 
Bacteroides thetaiotaomicron VPI-5482
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482
Predicted deacetylase
 
CRON 3.
plyC2
 
Bacteroides cellulosilyticus DSM 14838
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483
 
Bacteroides plebeius DSM 17135
 
Bacteroides stercoris ATCC 43183
*
Bacteroides thetaiotaomicron VPI-5482

Site:
position = -221
score = 8.30822
sequence = AAAATAGTGCAC-(9)-CAAAAAGTCCCC

Gene: BT4119: Pectate lyase C
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482
Pectate lyase C
BT4120
 
Bacteroides cellulosilyticus DSM 14838
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483
 
Bacteroides plebeius DSM 17135
 
Bacteroides stercoris ATCC 43183
 
Bacteroides thetaiotaomicron VPI-5482

Gene: BT4120: Predicted pectin lyase
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482
Predicted pectin lyase
susC_Rgu-2
 
Bacteroides cellulosilyticus DSM 14838
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697

Gene: BACEGG_00647: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483
 
Bacteroides plebeius DSM 17135
 
Bacteroides stercoris ATCC 43183
 
Bacteroides thetaiotaomicron VPI-5482

Gene: BT4121: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482

Gene: BVU_2913: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
susD_Rgu-2
 
Bacteroides cellulosilyticus DSM 14838
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697

Gene: BACEGG_00648: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483
 
Bacteroides plebeius DSM 17135
 
Bacteroides stercoris ATCC 43183
 
Bacteroides thetaiotaomicron VPI-5482

Gene: BT4122: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482

Gene: BVU_2914: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides
Outer membrane polysaccharide binding protein for rhamnogalacturonan oligosaccharides
pehX1
*
Bacteroides cellulosilyticus DSM 14838

Site:
position = -273
score = 8.76184
sequence = CAAAAAATCCAC-(9)-CAAATTGTGCAC

Gene: BACCELL_03143: Polygalacturonase (EC 3.2.1.15 )
 
Bacteroides coprophilus DSM 18228
*
Bacteroides dorei DSM 17855

Site:
position = -237
score = 9.50495
sequence = CAAAAAATCCAC-(9)-CAAATAGTGCAC

Gene: BACDOR_03070: Polygalacturonase (EC 3.2.1.15 )
*
Bacteroides eggerthii DSM 20697

Site:
position = -272
score = 9.17678
sequence = CAAAAAATACAC-(9)-CAATTAGTACAC

Gene: BACEGG_00876: Polygalacturonase (EC 3.2.1.15 )
 
Bacteroides fragilis NCTC 9343
*2
Bacteroides ovatus ATCC 8483

Site:
position = -267
score = 8.96233
sequence = CAAAAAATACAC-(9)-CAATTAGTCCAC

Gene: BACOVA_05040: Polygalacturonase (EC 3.2.1.15 )

Gene: BACOVA_04926: Polygalacturonase (EC 3.2.1.15 )
 
Bacteroides plebeius DSM 17135

Gene: BACPLE_03445: Polygalacturonase (EC 3.2.1.15 )
*
Bacteroides stercoris ATCC 43183

Site:
position = -205
score = 8.43367
sequence = CAAAAAATACAC-(9)-CAATTTGTACAC

Gene: BACSTE_03276: Polygalacturonase (EC 3.2.1.15 )
*2
Bacteroides thetaiotaomicron VPI-5482

Site:
position = -265
score = 9.00761
sequence = CAAAAAATACAC-(9)-CAATAACTCCAC

Gene: BT4187: Polygalacturonase (EC 3.2.1.15 )

Gene: BT4123: Polygalacturonase (EC 3.2.1.15 )
 
Bacteroides uniformis ATCC 8492
*
Bacteroides vulgatus ATCC 8482

Site:
position = -237
score = 9.50495
sequence = CAAAAAATCCAC-(9)-CAAATAGTGCAC

Gene: BVU_1985: Polygalacturonase (EC 3.2.1.15 )
Polygalacturonase (EC 3.2.1.15 )
GH88
 
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_03139: Glycosyl hydrolase, family 88
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855

Gene: BACDOR_03071: Glycosyl hydrolase, family 88
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483

Gene: BACOVA_05039: Glycosyl hydrolase, family 88
*
Bacteroides plebeius DSM 17135

Site:
position = -222
score = 7.02663
sequence = CAGTTTTTTCAC-(9)-CAAAAATTGCAA

Gene: BACPLE_03118: Glycosyl hydrolase, family 88
 
Bacteroides stercoris ATCC 43183

Gene: BACSTE_03277: Glycosyl hydrolase, family 88
 
Bacteroides thetaiotaomicron VPI-5482

Gene: BT4186: Glycosyl hydrolase, family 88
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482

Gene: BVU_1984: Glycosyl hydrolase, family 88
Glycosyl hydrolase, family 88
xylB
 
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_03138: xylosidase/arabinosidase
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855

Gene: BACDOR_03072: xylosidase/arabinosidase
 
Bacteroides eggerthii DSM 20697

Gene: BACEGG_00873: xylosidase/arabinosidase
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483

Gene: BACOVA_05037: xylosidase/arabinosidase
 
Bacteroides plebeius DSM 17135
 
Bacteroides stercoris ATCC 43183

Gene: BACSTE_03278: xylosidase/arabinosidase
 
Bacteroides thetaiotaomicron VPI-5482

Gene: BT4185: xylosidase/arabinosidase
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482

Gene: BVU_1983: xylosidase/arabinosidase
xylosidase/arabinosidase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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