Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog ArgR - Clostridia-1

Properties
Regulator type: Transcription factor
Regulator family: ArgR
Regulation mode: repressor
Biological process: Arginine biosynthesis
Effector: Arginine
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 75 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium acetobutylicum ATCC 824 16 8
Clostridium beijerincki NCIMB 8052 3 2
Clostridium botulinum A str. ATCC 3502 7 3
Clostridium butyricum 5521 5 3
Clostridium kluyveri DSM 555 13 3
Clostridium novyi NT 15 6
Clostridium perfringens ATCC 13124 6 3
Clostridium tetani E88 7 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
artP2
 
Clostridium acetobutylicum ATCC 824
 
Clostridium beijerincki NCIMB 8052
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium butyricum 5521
*2
Clostridium kluyveri DSM 555

Site:
position = -222
score = 4.86438
sequence = ATGTATATGTATAAAT

Site:
position = -122
score = 4.59811
sequence = ATGTATAATTATAAGG

Gene: CKL_2377: Arginine ABC transporter, substrate-binding protein

Site:
position = -88
score = 4.84682
sequence = TTGCATAATTATAATA

Site:
position = -68
score = 5.12392
sequence = ATGTATAATTATTTAT

Gene: CKL_0978: Arginine ABC transporter, substrate-binding protein
*
Clostridium novyi NT

Site:
position = -254
score = 5.09167
sequence = ATATATAATTATAAAA

Site:
position = -232
score = 4.52639
sequence = ATGTATAATAATACTG

Site:
position = -158
score = 4.80749
sequence = TTGTATATGTATAAAA

Site:
position = -138
score = 5.28929
sequence = TTGAATAAATATTCAT

Site:
position = -115
score = 4.84682
sequence = TTGCATAATTATAATA

Site:
position = -95
score = 5.12392
sequence = ATGTATAATTATTTAT

Site:
position = -10
score = 4.85953
sequence = GTGTATAAATATGAAA

Gene: NT01CX_0138: Arginine ABC transporter, substrate-binding protein
 
Clostridium perfringens ATCC 13124
*2
Clostridium tetani E88

Gene: CTC00558: Arginine ABC transporter, substrate-binding protein

Site:
position = -226
score = 4.78003
sequence = ATGTATAAATATTCGA

Site:
position = -73
score = 5.26697
sequence = TTGCATAAATATAAAT

Gene: CTC00557: Arginine ABC transporter, substrate-binding protein
Arginine ABC transporter, substrate-binding protein
artQ2
 2
Clostridium acetobutylicum ATCC 824

Gene: CAC0377: Arginine ABC transporter, permease protein

Gene: CAC3619: Arginine ABC transporter, permease protein
 
Clostridium beijerincki NCIMB 8052
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium butyricum 5521
 
Clostridium kluyveri DSM 555

Gene: CKL_0979: Arginine ABC transporter, permease protein
 
Clostridium novyi NT

Gene: NT01CX_0137: Arginine ABC transporter, permease protein
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88

Gene: CTC00559: Arginine ABC transporter, permease protein
Arginine ABC transporter, permease protein
artM2
 2
Clostridium acetobutylicum ATCC 824

Gene: CAC0378: Arginine ABC transporter, ATP-binding protein

Gene: CAC3618: Arginine ABC transporter, ATP-binding protein
 
Clostridium beijerincki NCIMB 8052
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO0420: Arginine ABC transporter, ATP-binding protein
 
Clostridium butyricum 5521
 
Clostridium kluyveri DSM 555

Gene: CKL_0980: Arginine ABC transporter, ATP-binding protein
 
Clostridium novyi NT

Gene: NT01CX_0136: Arginine ABC transporter, ATP-binding protein
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88

Gene: CTC00560: Arginine ABC transporter, ATP-binding protein
Arginine ABC transporter, ATP-binding protein
argG
*
Clostridium acetobutylicum ATCC 824

Site:
position = -123
score = 5.28548
sequence = ATGAATATTTATAAAA

Site:
position = -103
score = 4.71903
sequence = TTGCATAATTATAAGA

Site:
position = -83
score = 4.56267
sequence = ATTTATAATAATACCA

Gene: CAC0973: Argininosuccinate synthase (EC 6.3.4.5)
*
Clostridium beijerincki NCIMB 8052

Site:
position = -165
score = 4.66577
sequence = ATGAATATTTTTTCAT

Site:
position = -122
score = 4.83811
sequence = CTGTATAATTATAAAC

Site:
position = -46
score = 4.80433
sequence = ATGTATGTTTATGCAT

Gene: Cbei_4515: Argininosuccinate synthase (EC 6.3.4.5)
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -256
score = 4.68143
sequence = GTGCATAATTATAAAG

Site:
position = -139
score = 4.60916
sequence = TTGCATATTTATTATT

Site:
position = -119
score = 5.55159
sequence = ATGTATAATTATAAAA

Gene: CBO2670: Argininosuccinate synthase (EC 6.3.4.5)
*
Clostridium butyricum 5521

Site:
position = -87
score = 5.55159
sequence = ATGTATAATTATAAAA

Gene: CBY_1679: Argininosuccinate synthase (EC 6.3.4.5)
 
Clostridium kluyveri DSM 555

Gene: CKL_0981: Argininosuccinate synthase (EC 6.3.4.5)
 
Clostridium novyi NT

Gene: NT01CX_0135: Argininosuccinate synthase (EC 6.3.4.5)
*
Clostridium perfringens ATCC 13124

Site:
position = -72
score = 4.88931
sequence = TTGCATAAATATACTT

Site:
position = -52
score = 5.03443
sequence = ATGTATAATTATTAAC

Gene: CPF_0683: Argininosuccinate synthase (EC 6.3.4.5)
 
Clostridium tetani E88

Gene: CTC00561: Argininosuccinate synthase (EC 6.3.4.5)
Argininosuccinate synthase (EC 6.3.4.5)
argH
 
Clostridium acetobutylicum ATCC 824

Gene: CAC0974: Argininosuccinate lyase (EC 4.3.2.1)
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4516: Argininosuccinate lyase (EC 4.3.2.1)
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2669: Argininosuccinate lyase (EC 4.3.2.1)
 
Clostridium butyricum 5521

Gene: CBY_1678: Argininosuccinate lyase (EC 4.3.2.1)
 
Clostridium kluyveri DSM 555

Gene: CKL_0982: Argininosuccinate lyase (EC 4.3.2.1)
 
Clostridium novyi NT

Gene: NT01CX_0134: Argininosuccinate lyase (EC 4.3.2.1)
 
Clostridium perfringens ATCC 13124

Gene: CPF_0682: Argininosuccinate lyase (EC 4.3.2.1)
 
Clostridium tetani E88

Gene: CTC00562: Argininosuccinate lyase (EC 4.3.2.1)
Argininosuccinate lyase (EC 4.3.2.1)
argC
*
Clostridium acetobutylicum ATCC 824

Site:
position = -117
score = 5.17641
sequence = ATGAATAATTATACAC

Site:
position = -97
score = 4.95099
sequence = CTTTATAAATATTCAA

Site:
position = -63
score = 5.03576
sequence = TTGAATAATTATACTT

Gene: CAC2390: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4517: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium butyricum 5521

Gene: CBY_1677: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
*
Clostridium kluyveri DSM 555

Site:
position = -257
score = 4.74324
sequence = TTGTACATTTATAAAA

Site:
position = -224
score = 4.56952
sequence = TTGTATATTTATAATG

Site:
position = -123
score = 4.80201
sequence = ATTAATTTTTATAAAA

Site:
position = -102
score = 4.81086
sequence = TTGCATATTTATTTAT

Gene: CKL_1553: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
*
Clostridium novyi NT

Site:
position = -132
score = 5.00731
sequence = TTGAATAATTATACTA

Site:
position = -59
score = 4.87908
sequence = TTGAATAATTATGCTT

Gene: NT01CX_2379: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
argJ
*2
Clostridium acetobutylicum ATCC 824

Site:
position = -88
score = 5.29542
sequence = ATGCATAAATATAAAT

Site:
position = -68
score = 5.38497
sequence = TTGAATAATTATAAAA

Gene: CAC3020: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)

Gene: CAC2391: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4518: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium butyricum 5521

Gene: CBY_1675: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
 
Clostridium kluyveri DSM 555

Gene: CKL_1554: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
 
Clostridium novyi NT

Gene: NT01CX_2378: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88
Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
argB
*
Clostridium acetobutylicum ATCC 824

Site:
position = -98
score = 5.03576
sequence = AAGTATAATTATTCAA

Site:
position = -64
score = 4.95099
sequence = TTGAATATTTATAAAG

Site:
position = -44
score = 5.17641
sequence = GTGTATAATTATTCAT

Gene: CAC2389: Acetylglutamate kinase (EC 2.7.2.8)
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4519: Acetylglutamate kinase (EC 2.7.2.8)
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium butyricum 5521

Gene: CBY_1674: Acetylglutamate kinase (EC 2.7.2.8)
 
Clostridium kluyveri DSM 555

Gene: CKL_1555: Acetylglutamate kinase (EC 2.7.2.8)
*
Clostridium novyi NT

Site:
position = -102
score = 4.87908
sequence = AAGCATAATTATTCAA

Site:
position = -29
score = 5.00731
sequence = TAGTATAATTATTCAA

Gene: NT01CX_2380: Acetylglutamate kinase (EC 2.7.2.8)
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88
Acetylglutamate kinase (EC 2.7.2.8)
argD
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2388: Acetylornithine aminotransferase (EC 2.6.1.11)
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4520: Acetylornithine aminotransferase (EC 2.6.1.11)
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium butyricum 5521

Gene: CBY_1673: Acetylornithine aminotransferase (EC 2.6.1.11)
 
Clostridium kluyveri DSM 555

Gene: CKL_1556: Acetylornithine aminotransferase (EC 2.6.1.11)
 
Clostridium novyi NT

Gene: NT01CX_2381: Acetylornithine aminotransferase (EC 2.6.1.11)
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88
Acetylornithine aminotransferase (EC 2.6.1.11)
argF
 
Clostridium acetobutylicum ATCC 824
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4521: Ornithine carbamoyltransferase (EC 2.1.3.3)
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium butyricum 5521

Gene: CBY_1672: Ornithine carbamoyltransferase (EC 2.1.3.3)
 
Clostridium kluyveri DSM 555

Gene: CKL_2376: Ornithine carbamoyltransferase (EC 2.1.3.3)
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88
Ornithine carbamoyltransferase (EC 2.1.3.3)
carA
*
Clostridium acetobutylicum ATCC 824

Site:
position = -182
score = 5.29542
sequence = ATGCATAAATATAAAT

Site:
position = -81
score = 5.42365
sequence = ATGTATAAATATAAAA

Gene: CAC2645: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 
Clostridium beijerincki NCIMB 8052
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium butyricum 5521
 
Clostridium kluyveri DSM 555

Gene: CKL_2375: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
*
Clostridium novyi NT

Site:
position = -77
score = 5.26697
sequence = ATGTATAAATATGAAA

Site:
position = -57
score = 5.08597
sequence = ATGTATAAAAATTCAA

Gene: NT01CX_0383: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
carB
 
Clostridium acetobutylicum ATCC 824

Gene: CAC2644: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Clostridium beijerincki NCIMB 8052
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium butyricum 5521
 
Clostridium kluyveri DSM 555

Gene: CKL_2374: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Clostridium novyi NT

Gene: NT01CX_0382: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
CAC0376
*
Clostridium acetobutylicum ATCC 824

Site:
position = -65
score = 4.6096
sequence = TCGTATAAATATTAAA

Site:
position = -44
score = 4.60797
sequence = TTGTATACAAATACAA

Gene: CAC0376: NG,NG-dimethylarginine dimethylaminohydrolase 1 (EC 3.5.3.18)
 
Clostridium beijerincki NCIMB 8052
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium butyricum 5521
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88
NG,NG-dimethylarginine dimethylaminohydrolase 1 (EC 3.5.3.18)
CAC3620
*2
Clostridium acetobutylicum ATCC 824

Site:
position = -188
score = 4.53889
sequence = ATTAATGAATATAAAT

Site:
position = -131
score = 4.64186
sequence = TTGAATAAATATTCGT

Site:
position = -31
score = 4.9478
sequence = ATGAATAAAAATTCAA

Gene: CAC0380: Periplasmic amino acid-binding protein

Site:
position = -195
score = 5.15725
sequence = ATGCATAAATATTAAT

Site:
position = -70
score = 4.89627
sequence = GTTAATAATTATTCAT

Gene: CAC3620: Amino acid (probably glutamine) ABC transporter, periplasmic binding protein component
 
Clostridium beijerincki NCIMB 8052
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium butyricum 5521
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88
Amino acid (probably glutamine) ABC transporter, periplasmic binding protein component
 
CRON 2.
argT
 
Clostridium acetobutylicum ATCC 824
 
Clostridium beijerincki NCIMB 8052
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -62
score = 5.42365
sequence = TTTTATATTTATACAT

Gene: CBO1788: Predicted arginine uptake transporter
*
Clostridium butyricum 5521

Site:
position = -31
score = 5.08916
sequence = TTGTATATTTATAAAG

Site:
position = 0
score = 5.07574
sequence = ATGAATAATAATTCAA

Gene: CBY_2294: Predicted arginine uptake transporter
 
Clostridium kluyveri DSM 555
*
Clostridium novyi NT

Site:
position = -92
score = 5.2101
sequence = TTGTATTATTATAAAT

Site:
position = -72
score = 5.26697
sequence = ATGCATAAATATAAAA

Gene: NT01CX_1828: Predicted arginine uptake transporter
*
Clostridium perfringens ATCC 13124

Site:
position = -117
score = 5.42746
sequence = TTGAATATTTATACAT

Gene: CPF_2910: Predicted arginine uptake transporter
*
Clostridium tetani E88

Site:
position = -64
score = 4.74981
sequence = ATTAATATTTATGCAC

Site:
position = -34
score = 5.1288
sequence = TTGCATAAATATTAAT

Gene: CTC00841: Predicted arginine uptake transporter
Predicted arginine uptake transporter
 
CRON 3.
artP
 
Clostridium acetobutylicum ATCC 824
*
Clostridium beijerincki NCIMB 8052

Site:
position = -240
score = 4.7292
sequence = TTTTATAATTTTAAAA

Site:
position = -104
score = 4.93376
sequence = ATGAATAATAATTAAA

Site:
position = -70
score = 4.60507
sequence = TTGAGTAAATATAAAA

Site:
position = -50
score = 4.60981
sequence = GTGTATAATTATGCTA

Gene: Cbei_4781: Arginine ABC transporter, substrate-binding protein
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -43
score = 5.23084
sequence = ATGCATAATTATACAG

Gene: CBO2018: Arginine ABC transporter, substrate-binding protein
*
Clostridium butyricum 5521

Site:
position = -110
score = 4.68739
sequence = TTTAATATTTATTTAT

Site:
position = -76
score = 5.38497
sequence = TTGAATAATTATAAAA

Site:
position = -56
score = 5.17393
sequence = ATGTATAATTATACTA

Gene: CBY_1781: Arginine ABC transporter, substrate-binding protein
 
Clostridium kluyveri DSM 555
*
Clostridium novyi NT

Site:
position = -267
score = 4.58655
sequence = TTTTAAAAATATGCAA

Site:
position = -115
score = 5.04466
sequence = GTGTATAAATATAAAT

Site:
position = -84
score = 4.8393
sequence = ATACATAAATATTCAT

Site:
position = -61
score = 5.39491
sequence = TTGCATAATTATAAAT

Gene: NT01CX_0932: Arginine ABC transporter, substrate-binding protein
*
Clostridium perfringens ATCC 13124

Site:
position = -261
score = 4.57217
sequence = ATGTATAAAAACACAA

Site:
position = -77
score = 4.92928
sequence = TTGCATTTTTATTCAT

Site:
position = -56
score = 5.5554
sequence = ATGTATAATTATTCAA

Gene: CPF_0581: Arginine ABC transporter, substrate-binding protein
 
Clostridium tetani E88
Arginine ABC transporter, substrate-binding protein
artQ
 
Clostridium acetobutylicum ATCC 824
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4780: Arginine ABC transporter, permease protein
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2017: Arginine ABC transporter, permease protein
 
Clostridium butyricum 5521

Gene: CBY_1780: Arginine ABC transporter, permease protein
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT

Gene: NT01CX_0933: Arginine ABC transporter, permease protein
 
Clostridium perfringens ATCC 13124

Gene: CPF_0582: Arginine ABC transporter, permease protein
 
Clostridium tetani E88
Arginine ABC transporter, permease protein
artM
 
Clostridium acetobutylicum ATCC 824
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4779: Arginine ABC transporter, ATP-binding protein
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2016: Arginine ABC transporter, ATP-binding protein
 
Clostridium butyricum 5521

Gene: CBY_1779: Arginine ABC transporter, ATP-binding protein
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT

Gene: NT01CX_0934: Arginine ABC transporter, ATP-binding protein
 
Clostridium perfringens ATCC 13124

Gene: CPF_0583: Arginine ABC transporter, ATP-binding protein
 
Clostridium tetani E88
Arginine ABC transporter, ATP-binding protein
CBO2015
 
Clostridium acetobutylicum ATCC 824
 
Clostridium beijerincki NCIMB 8052
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2015: Aspartate aminotransferase (EC 2.6.1.1)
 
Clostridium butyricum 5521
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88
Aspartate aminotransferase (EC 2.6.1.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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