Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LexA - Clostridia-2

Properties
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 11 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium bartlettii DSM 16795 6 3
Clostridium difficile 630 6 4
Clostridium hiranonis DSM 13275 7 4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
lexA
*2
Clostridium bartlettii DSM 16795

Gene: CLOBAR_01864: SOS-response repressor and protease LexA (EC 3.4.21.88)

Site:
position = -105
score = 5.28884
sequence = AAGAACAAATGTTTGT

Gene: CLOBAR_01865: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Clostridium difficile 630

Site:
position = -86
score = 4.84549
sequence = AGGAACAAATGTTTGC

Gene: CD1931: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Clostridium hiranonis DSM 13275

Site:
position = -165
score = 4.8644
sequence = ACGAATAAATGTTTGT

Gene: CLOHIR_00530: SOS-response repressor and protease LexA (EC 3.4.21.88)
SOS-response repressor and protease LexA (EC 3.4.21.88)
 
CRON 2.
recA
*
Clostridium bartlettii DSM 16795

Site:
position = -62
score = 5.20194
sequence = GCGAACAAATGTTTGA

Gene: CLOBAR_02147: Recombination protein A
*
Clostridium difficile 630

Site:
position = -41
score = 5.16777
sequence = GAGAACAAATGTTTGT

Gene: CD1328: Recombination protein A
*
Clostridium hiranonis DSM 13275

Site:
position = -41
score = 5.24088
sequence = TAGAACAAATGTTTGA

Gene: CLOHIR_01234: Recombination protein A
Recombination protein A
 
CRON 3.
ruvC
*
Clostridium bartlettii DSM 16795

Site:
position = -47
score = 4.63522
sequence = TAGAACATAGGTTTGG

Gene: CLOBAR_01180: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
*
Clostridium difficile 630

Site:
position = -67
score = 4.99114
sequence = TAGAACATAAGTTTTT

Gene: CD2807: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
*
Clostridium hiranonis DSM 13275

Site:
position = -79
score = 4.91252
sequence = TAGTACATATGTTTGA

Gene: CLOHIR_00903: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
ruvA
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_01179: Holliday junction DNA helicase RuvA
 
Clostridium difficile 630

Gene: CD2806: Holliday junction DNA helicase RuvA
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00904: Holliday junction DNA helicase RuvA
Holliday junction DNA helicase RuvA
ruvB
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_01178: Holliday junction DNA helicase RuvB
 
Clostridium difficile 630

Gene: CD2805: Holliday junction DNA helicase RuvB
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00905: Holliday junction DNA helicase RuvB
Holliday junction DNA helicase RuvB
 
CRON 4.
recD
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00740: RecD-like DNA helicase YrrC
 
Clostridium difficile 630

Gene: CD0132: RecD-like DNA helicase YrrC
*
Clostridium hiranonis DSM 13275

Site:
position = -83
score = 5.10745
sequence = ACGAACTTATGTTTGA

Gene: CLOHIR_00026: RecD-like DNA helicase YrrC
RecD-like DNA helicase YrrC
comF
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00739: ComF operon protein C
 
Clostridium difficile 630

Gene: CD0133: ComF operon protein C
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00027: ComF operon protein C
ComF operon protein C
 
CRON 5.
CD1630
 
Clostridium bartlettii DSM 16795
*
Clostridium difficile 630

Site:
position = -89
score = 4.989
sequence = AAAAACTTATGTTTGC

Gene: CD1630: LexA regulated
 
Clostridium hiranonis DSM 13275
LexA regulated
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD