Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LexA - Clostridia-1

Properties
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 27 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium acetobutylicum ATCC 824 4 3
Clostridium beijerincki NCIMB 8052 7 5
Clostridium botulinum A str. ATCC 3502 2 2
Clostridium butyricum 5521 5 4
Clostridium kluyveri DSM 555 2 2
Clostridium novyi NT 4 3
Clostridium perfringens ATCC 13124 5 4
Clostridium tetani E88 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
recA
*
Clostridium acetobutylicum ATCC 824

Site:
position = -48
score = 5.24985
sequence = TAGAACAAATGTTCGA

Gene: CAC1815: Recombination protein A
*
Clostridium beijerincki NCIMB 8052

Site:
position = -38
score = 5.10156
sequence = TAGAACATAAGTTCGA

Gene: Cbei_1216: Recombination protein A
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -38
score = 5.12331
sequence = AAGAACATAAGTTCGG

Gene: CBO2405: Recombination protein A
*
Clostridium butyricum 5521

Site:
position = -34
score = 5.10156
sequence = TAGAACATAAGTTCGA

Gene: CBY_0292: Recombination protein A
*
Clostridium kluyveri DSM 555

Site:
position = -36
score = 5.2656
sequence = TAGAACATATGTTCTT

Gene: CKL_1445: Recombination protein A
*
Clostridium novyi NT

Site:
position = -49
score = 4.92667
sequence = TAGAACAAACGTTCGG

Gene: NT01CX_2123: Recombination protein A
*
Clostridium perfringens ATCC 13124

Site:
position = -35
score = 5.04817
sequence = TAGAACTTATGTTCGG

Gene: CPF_1927: Recombination protein A
*
Clostridium tetani E88

Site:
position = -54
score = 4.99145
sequence = TAGAACAGATGTTCGA

Gene: CTC01289: Recombination protein A
Recombination protein A
 
CRON 2.
Cbei_0030
 
Clostridium acetobutylicum ATCC 824
*
Clostridium beijerincki NCIMB 8052

Site:
position = -61
score = 4.67324
sequence = GTGAACATATGTTCTG

Site:
position = -32
score = 4.84166
sequence = ATGAACATATGTTTGC

Gene: Cbei_0030: hypothetical protein
 
Clostridium botulinum A str. ATCC 3502
*
Clostridium butyricum 5521

Site:
position = -33
score = 4.84166
sequence = ATGAACATATGTTTGC

Gene: CBY_2287: hypothetical protein
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT
*
Clostridium perfringens ATCC 13124

Site:
position = -131
score = 5.06757
sequence = GCGAACATATGTTTTA

Gene: CPF_2895: hypothetical protein
 
Clostridium tetani E88
hypothetical protein
 
CRON 3.
lexA
*
Clostridium acetobutylicum ATCC 824

Site:
position = -84
score = 4.71571
sequence = CAGAACATAAGTTTGC

Gene: CAC1832: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Clostridium beijerincki NCIMB 8052

Site:
position = -68
score = 4.28403
sequence = TAGAACACAAGTTTGC

Gene: Cbei_2561: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -71
score = 4.31785
sequence = TTGAACATTAGTTTGC

Gene: CBO1795: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Clostridium butyricum 5521

Site:
position = -68
score = 4.37669
sequence = CAGAACATAGGTTTGC

Gene: CBY_0192: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Clostridium kluyveri DSM 555

Site:
position = -72
score = 4.7691
sequence = TAGAACATAAGTTTGC

Gene: CKL_1579: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Clostridium novyi NT

Site:
position = -296
score = 4.77325
sequence = TCGAAAATTTGTTCTA

Site:
position = -70
score = 4.78169
sequence = TAGAACATTAGTTTGA

Gene: NT01CX_2111: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Clostridium perfringens ATCC 13124

Site:
position = -71
score = 4.60632
sequence = GAGAACATAAGTTTGC

Gene: CPF_1364: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Clostridium tetani E88

Site:
position = -80
score = 4.93188
sequence = TAGAACATAAGTTTGA

Gene: CTC01298: SOS-response repressor and protease LexA (EC 3.4.21.88)
SOS-response repressor and protease LexA (EC 3.4.21.88)
 
CRON 4.
uvrB
*
Clostridium acetobutylicum ATCC 824

Site:
position = -29
score = 5.36488
sequence = ACGAACAAATGTTTGA

Gene: CAC0502: Excinuclease ABC subunit B
*
Clostridium beijerincki NCIMB 8052

Site:
position = -31
score = 4.26698
sequence = ACGAATGTCTGTTCGG

Gene: Cbei_4864: Excinuclease ABC subunit B
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO3387: Excinuclease ABC subunit B
*
Clostridium butyricum 5521

Site:
position = -44
score = 4.57876
sequence = ACGAATGTTTGTTCGA

Gene: CBY_1843: Excinuclease ABC subunit B
 
Clostridium kluyveri DSM 555

Gene: CKL_3572: Excinuclease ABC subunit B
*
Clostridium novyi NT

Site:
position = -29
score = 4.88949
sequence = ATGAACAAATGTTCTT

Gene: NT01CX_1274: Excinuclease ABC subunit B
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88

Gene: CTC02504: Excinuclease ABC subunit B
Excinuclease ABC subunit B
uvrA
 
Clostridium acetobutylicum ATCC 824

Gene: CAC0503: Excinuclease ABC subunit A
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4863: Excinuclease ABC subunit A
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO3386: Excinuclease ABC subunit A
 
Clostridium butyricum 5521

Gene: CBY_1842: Excinuclease ABC subunit A
 
Clostridium kluyveri DSM 555

Gene: CKL_3571: Excinuclease ABC subunit A
 
Clostridium novyi NT

Gene: NT01CX_1275: Excinuclease ABC subunit A
 
Clostridium perfringens ATCC 13124

Gene: CPF_0337: Excinuclease ABC subunit A
 
Clostridium tetani E88

Gene: CTC02503: Excinuclease ABC subunit A
Excinuclease ABC subunit A
 
CRON 5.
PF06114
 
Clostridium acetobutylicum ATCC 824
*
Clostridium beijerincki NCIMB 8052

Site:
position = -65
score = 4.69476
sequence = TTGAACATACGTTCTT

Gene: Cbei_0879: Protein of unknown function DUF955
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium butyricum 5521
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT
*
Clostridium perfringens ATCC 13124

Site:
position = -76
score = 5.47517
sequence = AAGAACATATGTTCGA

Gene: CPF_1607: Protein of unknown function DUF955
 
Clostridium tetani E88
Protein of unknown function DUF955
CPF_1608
 
Clostridium acetobutylicum ATCC 824
 
Clostridium beijerincki NCIMB 8052
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium butyricum 5521
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124

Gene: CPF_1608: putative resolvase
 
Clostridium tetani E88
putative resolvase
Cbei_0878
 
Clostridium acetobutylicum ATCC 824
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_0878: Cassette chromosome recombinase B
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium butyricum 5521
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88
Cassette chromosome recombinase B
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
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