Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog SusR3 - Bacteroidaceae

Properties
Regulator type: Transcription factor
Regulator family: [Other]
Regulation mode:
Biological process: Polysaccharides utilization
Effector:
Phylum: Bacteroidetes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 4 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacteroides cellulosilyticus DSM 14838
Bacteroides coprophilus DSM 18228
Bacteroides dorei DSM 17855
Bacteroides eggerthii DSM 20697
Bacteroides fragilis NCTC 9343
Bacteroides ovatus ATCC 8483 5 1
Bacteroides plebeius DSM 17135
Bacteroides stercoris ATCC 43183
Bacteroides thetaiotaomicron VPI-5482 5 1
Bacteroides uniformis ATCC 8492
Bacteroides vulgatus ATCC 8482
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
susC3
 
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_02361: SusC3, outer membrane protein involved in polysaccharides binding
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
*
Bacteroides ovatus ATCC 8483

Site:
position = -194
score = 5.43398
sequence = AACCACTTTTTTGGATAT

Site:
position = -127
score = 5.93839
sequence = ATCCACTTATTGACCCCT

Gene: BACOVA_00942: SusC3, outer membrane protein involved in polysaccharides binding
 
Bacteroides plebeius DSM 17135
 
Bacteroides stercoris ATCC 43183
*
Bacteroides thetaiotaomicron VPI-5482

Site:
position = -127
score = 6.06779
sequence = ATCCACTTATTATACCCT

Site:
position = -194
score = 5.98591
sequence = ATCCACTTTTTAGGCCTC

Gene: BT3310: SusC3, outer membrane protein involved in polysaccharides binding
 
Bacteroides uniformis ATCC 8492

Gene: BACUNI_00152: SusC3, outer membrane protein involved in polysaccharides binding
 
Bacteroides vulgatus ATCC 8482
SusC3, outer membrane protein involved in polysaccharides binding
susD3
 
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_02362: SusD3, outer membrane protein
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483

Gene: BACOVA_00943: SusD3, outer membrane protein
 
Bacteroides plebeius DSM 17135
 
Bacteroides stercoris ATCC 43183
 
Bacteroides thetaiotaomicron VPI-5482

Gene: BT3311: SusD3, outer membrane protein
 
Bacteroides uniformis ATCC 8492

Gene: BACUNI_00151: SusD3, outer membrane protein
 
Bacteroides vulgatus ATCC 8482
SusD3, outer membrane protein
PF02055
 
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_01652: Predicted O-glycosyl hydrolase
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483

Gene: BACOVA_00944: Predicted O-glycosyl hydrolase
 
Bacteroides plebeius DSM 17135
 
Bacteroides stercoris ATCC 43183
 
Bacteroides thetaiotaomicron VPI-5482

Gene: BT3312: Predicted O-glycosyl hydrolase
 
Bacteroides uniformis ATCC 8492

Gene: BACUNI_00150: Predicted O-glycosyl hydrolase
 
Bacteroides vulgatus ATCC 8482
Predicted O-glycosyl hydrolase
BT3313
 
Bacteroides cellulosilyticus DSM 14838
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483

Gene: BACOVA_00945: Conserved hypothetical protein
 
Bacteroides plebeius DSM 17135
 
Bacteroides stercoris ATCC 43183
 
Bacteroides thetaiotaomicron VPI-5482

Gene: BT3313: Conserved hypothetical protein
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482
Conserved hypothetical protein
bglB
 
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_01677: Predicted thermostable beta-glucosidase B
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483

Gene: BACOVA_00946: Predicted thermostable beta-glucosidase B
 
Bacteroides plebeius DSM 17135
 
Bacteroides stercoris ATCC 43183
 
Bacteroides thetaiotaomicron VPI-5482

Gene: BT3314: Predicted thermostable beta-glucosidase B
 
Bacteroides uniformis ATCC 8492

Gene: BACUNI_01042: Predicted thermostable beta-glucosidase B
 
Bacteroides vulgatus ATCC 8482
Predicted thermostable beta-glucosidase B
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD