Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog glnA - Cyanobacteria

Properties
Regulator type: RNA regulatory element
Name: glnA
RFAM: RF01739
Regulation mode:
Biological process: Nitrogen assimilation
Effector: L-glutamine
Phylum: Cyanobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Cyanothece sp. ATCC 51142 2 2
Cyanothece sp. PCC 7425 3 3
Cyanothece sp. PCC 8801 1 1
Gloeobacter violaceus PCC 7421
Microcystis aeruginosa NIES-843
Nostoc sp. PCC 7120
Prochlorococcus marinus str. MIT 9313 3 1
Synechococcus elongatus PCC 7942 1 1
Synechococcus sp. JA-3-3Ab 1 1
Synechococcus sp. PCC 7002
Synechococcus sp. WH 8102
Synechocystis sp. PCC 6803 1 1
Thermosynechococcus elongatus BP-1 2 2
Trichodesmium erythraeum IMS101 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
IF17
*2
Cyanothece sp. ATCC 51142

Gene: cce_3088: Glutamine synthetase inactivating factor IF17

Site:
position = -117
score = 50.02
sequence = AATCGTTCATCCTTT...

Gene: cce_2638: Glutamine synthetase inactivating factor IF17
*3
Cyanothece sp. PCC 7425

Site:
position = -154
score = 50.42
sequence = TCGTTCATCTCTCCA...

Gene: Cyan7425_2387: Glutamine synthetase inactivating factor IF17

Site:
position = -130
score = 50.94
sequence = CATCGTTCATCTCCA...

Gene: Cyan7425_4644: Glutamine synthetase inactivating factor IF17

Site:
position = -132
score = 49.29
sequence = GATCGTTCATCTCTC...

Gene: Cyan7425_1393: Glutamine synthetase inactivating factor IF17
 
Cyanothece sp. PCC 8801
 
Gloeobacter violaceus PCC 7421
 
Microcystis aeruginosa NIES-843
 
Nostoc sp. PCC 7120
 
Prochlorococcus marinus str. MIT 9313
*
Synechococcus elongatus PCC 7942

Site:
position = -94
score = 41.57
sequence = AATCGTTGGCCCAGT...

Gene: Synpcc7942_2529: Glutamine synthetase inactivating factor IF17
*
Synechococcus sp. JA-3-3Ab

Site:
position = -188
score = 48.9
sequence = AATCGTTCATCCTCT...

Gene: CYA_0922: Glutamine synthetase inactivating factor IF17
 
Synechococcus sp. PCC 7002
 
Synechococcus sp. WH 8102
*
Synechocystis sp. PCC 6803

Site:
position = -96
score = 56.22
sequence = AATCGTTCATCTTCT...

Gene: sll1515: Glutamine synthetase inactivating factor IF17
*3
Thermosynechococcus elongatus BP-1

Gene: tlr0313: Glutamine synthetase inactivating factor IF17

Site:
position = -97
score = 42.04
sequence = CAGCGTTGTTCCTTT...

Gene: tll0165 (deprecated): Glutamine synthetase inactivating factor IF17

Site:
position = -124
score = 49.82
sequence = AATCGTTCATCTTCG...

Gene: tll1670 (deprecated): Glutamine synthetase inactivating factor IF17
*
Trichodesmium erythraeum IMS101

Site:
position = -86
score = 39.73
sequence = AAGCGTTCATCTTCT...

Gene: Tery_3029: Glutamine synthetase inactivating factor IF17
Glutamine synthetase inactivating factor IF17
 
CRON 2.
cce_1045
*
Cyanothece sp. ATCC 51142

Site:
position = -95
score = 55.46
sequence = TCGTTCATCTGTTGT...

Gene: cce_1045: hypothetical protein
 
Cyanothece sp. PCC 7425
*
Cyanothece sp. PCC 8801

Site:
position = -103
score = 47.16
sequence = AATCGTTCATCCGCC...

Gene: PCC8801_4348: hypothetical protein
 
Gloeobacter violaceus PCC 7421
 
Microcystis aeruginosa NIES-843
 
Nostoc sp. PCC 7120
 
Prochlorococcus marinus str. MIT 9313
 
Synechococcus elongatus PCC 7942
 
Synechococcus sp. JA-3-3Ab
 
Synechococcus sp. PCC 7002
 
Synechococcus sp. WH 8102
 
Synechocystis sp. PCC 6803
 
Thermosynechococcus elongatus BP-1
 
Trichodesmium erythraeum IMS101
hypothetical protein
 
CRON 3.
PMT1479
 
Cyanothece sp. ATCC 51142
 
Cyanothece sp. PCC 7425
 
Cyanothece sp. PCC 8801
 
Gloeobacter violaceus PCC 7421
 
Microcystis aeruginosa NIES-843
 
Nostoc sp. PCC 7120
*
Prochlorococcus marinus str. MIT 9313

Site:
position = -137
score = 35.24
sequence = ACGTTGAGCTAGGTC...

Gene: PMT1479: possible Extracellular link domain
 
Synechococcus elongatus PCC 7942
 
Synechococcus sp. JA-3-3Ab
 
Synechococcus sp. PCC 7002
 
Synechococcus sp. WH 8102
 
Synechocystis sp. PCC 6803
 
Thermosynechococcus elongatus BP-1
 
Trichodesmium erythraeum IMS101
possible Extracellular link domain
PMT1480
 
Cyanothece sp. ATCC 51142
 
Cyanothece sp. PCC 7425
 
Cyanothece sp. PCC 8801
 
Gloeobacter violaceus PCC 7421
 
Microcystis aeruginosa NIES-843
 
Nostoc sp. PCC 7120
 
Prochlorococcus marinus str. MIT 9313

Gene: PMT1480: hypothetical protein
 
Synechococcus elongatus PCC 7942
 
Synechococcus sp. JA-3-3Ab
 
Synechococcus sp. PCC 7002
 
Synechococcus sp. WH 8102
 
Synechocystis sp. PCC 6803
 
Thermosynechococcus elongatus BP-1
 
Trichodesmium erythraeum IMS101
hypothetical protein
glnK
 
Cyanothece sp. ATCC 51142
 
Cyanothece sp. PCC 7425
 
Cyanothece sp. PCC 8801
 
Gloeobacter violaceus PCC 7421

Gene: gvip021: Nitrogen regulatory protein P-II
 
Microcystis aeruginosa NIES-843
 
Nostoc sp. PCC 7120
 
Prochlorococcus marinus str. MIT 9313

Gene: PMT1481: Nitrogen regulatory protein P-II
 
Synechococcus elongatus PCC 7942
 
Synechococcus sp. JA-3-3Ab
 
Synechococcus sp. PCC 7002
 
Synechococcus sp. WH 8102

Gene: SYNW0462: Nitrogen regulatory protein P-II
 
Synechocystis sp. PCC 6803
 
Thermosynechococcus elongatus BP-1
 
Trichodesmium erythraeum IMS101
Nitrogen regulatory protein P-II
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD