Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog RhaR - Bacteroidaceae

Properties
Regulator type: Transcription factor
Regulator family: AraC
Regulation mode: activator
Biological process: Rhamnose utilization
Effector: Rhamnose
Phylum: Bacteroidetes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacteroides cellulosilyticus DSM 14838 5 1
Bacteroides coprophilus DSM 18228
Bacteroides dorei DSM 17855 4 1
Bacteroides eggerthii DSM 20697 3 1
Bacteroides fragilis NCTC 9343
Bacteroides ovatus ATCC 8483 5 1
Bacteroides plebeius DSM 17135
Bacteroides stercoris ATCC 43183 6 1
Bacteroides thetaiotaomicron VPI-5482 5 1
Bacteroides uniformis ATCC 8492 5 1
Bacteroides vulgatus ATCC 8482 4 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rhaB
*
Bacteroides cellulosilyticus DSM 14838

Site:
position = -88
score = 7.12037
sequence = TCAGAAA-(14)-TCAAAAC

Gene: BACCELL_01175: Rhamnulokinase (EC 2.7.1.5)
 
Bacteroides coprophilus DSM 18228
*
Bacteroides dorei DSM 17855

Site:
position = -100
score = 7.08695
sequence = CCAAATC-(14)-TCAAAAA

Gene: BACDOR_01175: Rhamnulokinase (EC 2.7.1.5)
*
Bacteroides eggerthii DSM 20697

Site:
position = -95
score = 7.74299
sequence = TCAAATC-(14)-TCAAAAT

Gene: BACEGG_03663: Rhamnulokinase (EC 2.7.1.5)
 
Bacteroides fragilis NCTC 9343
*
Bacteroides ovatus ATCC 8483

Site:
position = -107
score = 8.14966
sequence = TCAAAAT-(14)-TCAAAAT

Gene: BACOVA_03601: Rhamnulokinase (EC 2.7.1.5)
 
Bacteroides plebeius DSM 17135

Gene: BACPLE_00612: Rhamnulokinase (EC 2.7.1.5)
*
Bacteroides stercoris ATCC 43183

Site:
position = -95
score = 7.74299
sequence = TCAAATC-(14)-TCAAAAT

Gene: BACSTE_00367: Rhamnulokinase (EC 2.7.1.5)
*
Bacteroides thetaiotaomicron VPI-5482

Site:
position = -107
score = 8.14966
sequence = TCAAAAT-(14)-TCAAAAT

Gene: BT3763: Rhamnulokinase (EC 2.7.1.5)
*
Bacteroides uniformis ATCC 8492

Site:
position = -95
score = 7.51694
sequence = TCAAATC-(14)-TCAAAAA

Gene: BACUNI_00421: Rhamnulokinase (EC 2.7.1.5)
*
Bacteroides vulgatus ATCC 8482

Site:
position = -99
score = 7.08695
sequence = CCAAATC-(14)-TCAAAAA

Gene: BVU_0595: Rhamnulokinase (EC 2.7.1.5)
Rhamnulokinase (EC 2.7.1.5)
rhaA
 
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_01174: L-rhamnose isomerase (EC 5.3.1.14)
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855

Gene: BACDOR_01174: L-rhamnose isomerase (EC 5.3.1.14)
 
Bacteroides eggerthii DSM 20697

Gene: BACEGG_03664: L-rhamnose isomerase (EC 5.3.1.14)
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483

Gene: BACOVA_03602: L-rhamnose isomerase (EC 5.3.1.14)
 
Bacteroides plebeius DSM 17135

Gene: BACPLE_00613: L-rhamnose isomerase (EC 5.3.1.14)
 
Bacteroides stercoris ATCC 43183

Gene: BACSTE_00366: L-rhamnose isomerase (EC 5.3.1.14)
 
Bacteroides thetaiotaomicron VPI-5482

Gene: BT3764: L-rhamnose isomerase (EC 5.3.1.14)
 
Bacteroides uniformis ATCC 8492

Gene: BACUNI_00420: L-rhamnose isomerase (EC 5.3.1.14)
 
Bacteroides vulgatus ATCC 8482

Gene: BVU_0596: L-rhamnose isomerase (EC 5.3.1.14)
L-rhamnose isomerase (EC 5.3.1.14)
rhaT
 
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_01173: L-rhamnose-proton symporter
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855

Gene: BACDOR_01173: L-rhamnose-proton symporter
 
Bacteroides eggerthii DSM 20697

Gene: BACEGG_03665: L-rhamnose-proton symporter
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483

Gene: BACOVA_03603: L-rhamnose-proton symporter
 
Bacteroides plebeius DSM 17135

Gene: BACPLE_00614: L-rhamnose-proton symporter
 
Bacteroides stercoris ATCC 43183

Gene: BACSTE_00365: L-rhamnose-proton symporter
 
Bacteroides thetaiotaomicron VPI-5482

Gene: BT3765: L-rhamnose-proton symporter
 
Bacteroides uniformis ATCC 8492

Gene: BACUNI_00419: L-rhamnose-proton symporter
 
Bacteroides vulgatus ATCC 8482

Gene: BVU_0597: L-rhamnose-proton symporter
L-rhamnose-proton symporter
rhaD
 
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_01172: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855

Gene: BACDOR_01172: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)
 
Bacteroides eggerthii DSM 20697

Gene: BACEGG_03666: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483

Gene: BACOVA_03604: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)
 
Bacteroides plebeius DSM 17135

Gene: BACPLE_00615: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)
 
Bacteroides stercoris ATCC 43183

Gene: BACSTE_00364: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)
 
Bacteroides thetaiotaomicron VPI-5482

Gene: BT3766: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)
 
Bacteroides uniformis ATCC 8492

Gene: BACUNI_00418: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)
 
Bacteroides vulgatus ATCC 8482

Gene: BVU_0598: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)
rhaO
 
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_04671: Lactaldehyde reductase (EC 1.1.1.77)
 
Bacteroides coprophilus DSM 18228

Gene: BACCOPRO_03382: Lactaldehyde reductase (EC 1.1.1.77)
 
Bacteroides dorei DSM 17855

Gene: BACDOR_02104: Lactaldehyde reductase (EC 1.1.1.77)
 
Bacteroides eggerthii DSM 20697

Gene: BACEGG_03667: Lactaldehyde reductase (EC 1.1.1.77)
 
Bacteroides fragilis NCTC 9343

Gene: BF0212: Lactaldehyde reductase (EC 1.1.1.77)
 
Bacteroides ovatus ATCC 8483

Gene: BACOVA_03605: Lactaldehyde reductase (EC 1.1.1.77)
 
Bacteroides plebeius DSM 17135

Gene: BACPLE_00616: Lactaldehyde reductase (EC 1.1.1.77)
 
Bacteroides stercoris ATCC 43183

Gene: BACSTE_00363: Lactaldehyde reductase (EC 1.1.1.77)
 
Bacteroides thetaiotaomicron VPI-5482

Gene: BT3767: Lactaldehyde reductase (EC 1.1.1.77)
 
Bacteroides uniformis ATCC 8492

Gene: BACUNI_00417: Lactaldehyde reductase (EC 1.1.1.77)
 
Bacteroides vulgatus ATCC 8482

Gene: BVU_1251: Lactaldehyde reductase (EC 1.1.1.77)
Lactaldehyde reductase (EC 1.1.1.77)
rhiN
 
Bacteroides cellulosilyticus DSM 14838

Gene: BACCELL_01171: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
 
Bacteroides coprophilus DSM 18228
 
Bacteroides dorei DSM 17855
 
Bacteroides eggerthii DSM 20697
 
Bacteroides fragilis NCTC 9343
 
Bacteroides ovatus ATCC 8483
 
Bacteroides plebeius DSM 17135
 
Bacteroides stercoris ATCC 43183

Gene: BACSTE_00362: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
 
Bacteroides thetaiotaomicron VPI-5482
 
Bacteroides uniformis ATCC 8492
 
Bacteroides vulgatus ATCC 8482
Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD