Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LexA - Lactobacillaceae

Properties
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 99 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Lactobacillus acidophilus NCFM 7 4
Lactobacillus brevis ATCC 367 15 8
Lactobacillus casei ATCC 334 12 9
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 5 4
Lactobacillus fermentum IFO 3956 8 5
Lactobacillus helveticus DPC 4571 8 5
Lactobacillus johnsonii NCC 533 5 4
Lactobacillus plantarum WCFS1 17 9
Lactobacillus reuteri JCM 1112 10 6
Lactobacillus rhamnosus GG 14 9
Lactobacillus sakei subsp. sakei 23K 8 6
Lactobacillus salivarius subsp. salivarius UCC118 2 2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 14 8
Oenococcus oeni PSU-1 9 6
Pediococcus pentosaceus ATCC 25745 8 6
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
dnaE
 
Lactobacillus acidophilus NCFM

Gene: LBA0955: DNA polymerase III alpha subunit (EC 2.7.7.7)
*
Lactobacillus brevis ATCC 367

Site:
position = -86
score = 4.7212
sequence = ACGAACATTTGTTCAT

Gene: LVIS_0763: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Lactobacillus casei ATCC 334

Gene: LSEI_1363: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_0760: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0867: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Lactobacillus helveticus DPC 4571

Gene: lhv_1048: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Lactobacillus johnsonii NCC 533

Gene: LJ1077: DNA polymerase III alpha subunit (EC 2.7.7.7)
*
Lactobacillus plantarum WCFS1

Site:
position = -191
score = 4.28035
sequence = TAGAACAACTGTTTGG

Gene: lp_1899: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0721: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Lactobacillus rhamnosus GG

Gene: LGG_01373: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA1034: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_0865: DNA polymerase III alpha subunit (EC 2.7.7.7)
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -29
score = 4.52531
sequence = GAAAACGGATGTTCGT

Gene: LEUM_0774: DNA polymerase III alpha subunit (EC 2.7.7.7)
*
Oenococcus oeni PSU-1

Site:
position = -45
score = 4.98337
sequence = GCGAACATACTTTCGT

Gene: OEOE_1000: DNA polymerase III alpha subunit (EC 2.7.7.7)
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1094: DNA polymerase III alpha subunit (EC 2.7.7.7)
DNA polymerase III alpha subunit (EC 2.7.7.7)
 
CRON 2.
addB
*
Lactobacillus acidophilus NCFM

Site:
position = -8
score = 4.05086
sequence = GCGAACAAATGATCAA

Gene: LBA1166: ATP-dependent nuclease, subunit B
*
Lactobacillus brevis ATCC 367

Site:
position = -202
score = 4.44626
sequence = TTGAACGTGTGTTCGT

Gene: LVIS_2268: ATP-dependent nuclease, subunit B
 
Lactobacillus casei ATCC 334

Gene: LSEI_1490: ATP-dependent nuclease, subunit B
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_0907: ATP-dependent nuclease, subunit B
*
Lactobacillus fermentum IFO 3956

Site:
position = -75
score = 4.13981
sequence = GCGAACATTCATTCCC

Gene: LAF_0036: ATP-dependent nuclease, subunit B
*
Lactobacillus helveticus DPC 4571

Site:
position = -8
score = 4.05086
sequence = GCGAACAAATGATCAA

Gene: lhv_1274: ATP-dependent nuclease, subunit B
 
Lactobacillus johnsonii NCC 533

Gene: LJ1204: ATP-dependent nuclease, subunit B
*
Lactobacillus plantarum WCFS1

Site:
position = -32
score = 4.33099
sequence = GAGAACGTTTGTTCAG

Gene: lp_2694: ATP-dependent nuclease, subunit B
*
Lactobacillus reuteri JCM 1112

Site:
position = -67
score = 4.75461
sequence = AAGAATATATGTTCGT

Gene: LAR_0047: ATP-dependent nuclease, subunit B
 
Lactobacillus rhamnosus GG

Gene: LGG_01497: ATP-dependent nuclease, subunit B
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0909: ATP-dependent nuclease, subunit B
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_1608: ATP-dependent nuclease, subunit B
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1482: ATP-dependent nuclease, subunit B
 
Oenococcus oeni PSU-1

Gene: OEOE_0308: ATP-dependent nuclease, subunit B
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1833: ATP-dependent nuclease, subunit B
ATP-dependent nuclease, subunit B
addA
 
Lactobacillus acidophilus NCFM

Gene: LBA1165: ATP-dependent nuclease, subunit A
 
Lactobacillus brevis ATCC 367

Gene: LVIS_2267: ATP-dependent nuclease, subunit A
 
Lactobacillus casei ATCC 334

Gene: LSEI_1489: ATP-dependent nuclease, subunit A
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_0908: ATP-dependent nuclease, subunit A
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0037: ATP-dependent nuclease, subunit A
 
Lactobacillus helveticus DPC 4571

Gene: lhv_1273: ATP-dependent nuclease, subunit A
 
Lactobacillus johnsonii NCC 533

Gene: LJ1203: ATP-dependent nuclease, subunit A
 
Lactobacillus plantarum WCFS1

Gene: lp_2693: ATP-dependent nuclease, subunit A
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0048: ATP-dependent nuclease, subunit A
 
Lactobacillus rhamnosus GG

Gene: LGG_01496: ATP-dependent nuclease, subunit A
 2
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0910: ATP-dependent nuclease, subunit A

Gene: LSA0911: ATP-dependent nuclease, subunit A
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_1607: ATP-dependent nuclease, subunit A
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1481: ATP-dependent nuclease, subunit A
 
Oenococcus oeni PSU-1

Gene: OEOE_0309: ATP-dependent nuclease, subunit A
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1832: ATP-dependent nuclease, subunit A
ATP-dependent nuclease, subunit A
dinG
 
Lactobacillus acidophilus NCFM

Gene: LBA1164: DinG family ATP-dependent helicase
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334

Gene: LSEI_1488: DinG family ATP-dependent helicase
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_0909: DinG family ATP-dependent helicase
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571

Gene: lhv_1272: DinG family ATP-dependent helicase
 
Lactobacillus johnsonii NCC 533

Gene: LJ1202: DinG family ATP-dependent helicase
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG

Gene: LGG_01495: DinG family ATP-dependent helicase
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0912: DinG family ATP-dependent helicase
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_0686: DinG family ATP-dependent helicase
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
DinG family ATP-dependent helicase
LEUM_1483
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -62
score = 4.2747
sequence = ACGAACAATCGTGCGC

Gene: LEUM_1483: Predicted esterase
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
Predicted esterase
 
CRON 3.
uvrC
 
Lactobacillus acidophilus NCFM

Gene: LBA0946: Nuclease subunit of the excinuclease complex
*
Lactobacillus brevis ATCC 367

Site:
position = -64
score = 4.41145
sequence = CCAAACAAACATTCGG

Gene: LVIS_1383: Nuclease subunit of the excinuclease complex
*
Lactobacillus casei ATCC 334

Site:
position = -29
score = 4.89813
sequence = GCGAACATTTGTTTTA

Gene: LSEI_1346: Nuclease subunit of the excinuclease complex
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_0746: Nuclease subunit of the excinuclease complex
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0625: Nuclease subunit of the excinuclease complex
 
Lactobacillus helveticus DPC 4571

Gene: lhv_1040: Nuclease subunit of the excinuclease complex
 
Lactobacillus johnsonii NCC 533

Gene: LJ1070: Nuclease subunit of the excinuclease complex
 
Lactobacillus plantarum WCFS1

Gene: lp_2109: Nuclease subunit of the excinuclease complex
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0634: Nuclease subunit of the excinuclease complex
*
Lactobacillus rhamnosus GG

Site:
position = -29
score = 4.89813
sequence = GCGAACATTTGTTTTA

Gene: LGG_01358: Nuclease subunit of the excinuclease complex
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -35
score = 4.3607
sequence = ACGAACACTTGTTTTG

Gene: LSA1055: Nuclease subunit of the excinuclease complex
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_1098: Nuclease subunit of the excinuclease complex
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0520: Nuclease subunit of the excinuclease complex
 
Oenococcus oeni PSU-1

Gene: OEOE_1073: Nuclease subunit of the excinuclease complex
*
Pediococcus pentosaceus ATCC 25745

Site:
position = 16
score = 3.8551
sequence = TTGAACATAAGTTGGC

Gene: PEPE_1135: Nuclease subunit of the excinuclease complex
Nuclease subunit of the excinuclease complex
 
CRON 4.
srmB
 
Lactobacillus acidophilus NCFM
*
Lactobacillus brevis ATCC 367

Site:
position = -70
score = 4.06559
sequence = TCGAACACGCGTTCAA

Gene: LVIS_1870: DinG family ATP-dependent helicase
*
Lactobacillus casei ATCC 334

Site:
position = -55
score = 4.4734
sequence = GAGAATGTATGTTCTA

Gene: LSEI_0288: DinG family ATP-dependent helicase
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
*
Lactobacillus plantarum WCFS1

Site:
position = -52
score = 4.5697
sequence = ACGAACAGATGTTTTA

Gene: lp_0308: DinG family ATP-dependent helicase
 
Lactobacillus reuteri JCM 1112
*
Lactobacillus rhamnosus GG

Site:
position = -55
score = 4.32832
sequence = CAGAATGTATGTTCTA

Gene: LGG_00328: DinG family ATP-dependent helicase
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_0349: DinG family ATP-dependent helicase
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1728: DinG family ATP-dependent helicase
DinG family ATP-dependent helicase
lp_0307
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1871: Conserved hypothetical protein
 
Lactobacillus casei ATCC 334

Gene: LSEI_0287: Conserved hypothetical protein
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_0307: Conserved hypothetical protein
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG

Gene: LGG_00327: Conserved hypothetical protein
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
Conserved hypothetical protein
lp_0306
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1872: Conserved hypothetical protein
 
Lactobacillus casei ATCC 334

Gene: LSEI_0286: Conserved hypothetical protein
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_0306: Conserved hypothetical protein
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG

Gene: LGG_00326: Conserved hypothetical protein
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
Conserved hypothetical protein
 
CRON 5.
recA
*
Lactobacillus acidophilus NCFM

Site:
position = -82
score = 4.16045
sequence = TTGAACATTAGTTTGT

Gene: LBA0666: DNA recombinase A
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1237: DNA recombinase A
*2
Lactobacillus casei ATCC 334

Gene: LSEI_0923: DNA recombinase A

Site:
position = -221
score = 4.82393
sequence = ACAAACGCATGTTCGA

Gene: LSEI_2649: DNA recombinase A
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -84
score = 4.0955
sequence = TTGAACGTTAGTTCGG

Gene: LBUL_0535: DNA recombinase A
*
Lactobacillus fermentum IFO 3956

Site:
position = -89
score = 3.9005
sequence = CCGAACCCCTGTTCGA

Gene: LAF_0511: DNA recombinase A
*
Lactobacillus helveticus DPC 4571

Site:
position = -82
score = 4.07998
sequence = TTGAACGTTAGTTTGT

Gene: lhv_0713: DNA recombinase A
 
Lactobacillus johnsonii NCC 533

Gene: LJ0839: DNA recombinase A
*
Lactobacillus plantarum WCFS1

Site:
position = -90
score = 4.81157
sequence = ACGAACTTTTGTTCGC

Gene: lp_2301: DNA recombinase A
*
Lactobacillus reuteri JCM 1112

Site:
position = -89
score = 4.31521
sequence = ACGAACTTTTGTTCAC

Gene: LAR_0509: DNA recombinase A
*2
Lactobacillus rhamnosus GG

Gene: LGG_00889: DNA recombinase A

Site:
position = -69
score = 4.43742
sequence = ACAAACGCGTGTTCGA

Gene: LGG_02643: DNA recombinase A
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -94
score = 4.89442
sequence = AAGAACGTTTGTTCGA

Gene: LSA0487: DNA recombinase A
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_1130: DNA recombinase A
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -82
score = 5.2234
sequence = ACGAACAAATGTTCGA

Gene: LEUM_0584: DNA recombinase A
*
Oenococcus oeni PSU-1

Site:
position = -57
score = 5.21756
sequence = ACGAACAAATGTTCGT

Gene: OEOE_1382: DNA recombinase A
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -84
score = 4.81741
sequence = TCGAACTTTTGTTCGC

Gene: PEPE_1276: DNA recombinase A
DNA recombinase A
 
CRON 6.
dinP
 
Lactobacillus acidophilus NCFM

Gene: LBA0414: DNA polymerase IV (EC 2.7.7.7)
*
Lactobacillus brevis ATCC 367

Site:
position = -49
score = 4.20368
sequence = GCAAACGCCCGTTCGG

Gene: LVIS_1226: DNA polymerase IV (EC 2.7.7.7)
 
Lactobacillus casei ATCC 334

Gene: LSEI_0779: DNA polymerase IV (EC 2.7.7.7)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1489: DNA polymerase IV (EC 2.7.7.7)
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571

Gene: lhv_0433: DNA polymerase IV (EC 2.7.7.7)
 
Lactobacillus johnsonii NCC 533

Gene: LJ0471: DNA polymerase IV (EC 2.7.7.7)
*
Lactobacillus plantarum WCFS1

Site:
position = -85
score = 4.83277
sequence = TTGAACGTATGTTCGT

Gene: lp_2280: DNA polymerase IV (EC 2.7.7.7)
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG

Gene: LGG_00761: DNA polymerase IV (EC 2.7.7.7)
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0382: DNA polymerase IV (EC 2.7.7.7)
 
Lactobacillus salivarius subsp. salivarius UCC118
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -32
score = 3.90206
sequence = AAGAACACTTGTTCCT

Gene: LEUM_1586: DNA polymerase IV (EC 2.7.7.7)
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1266: DNA polymerase IV (EC 2.7.7.7)
DNA polymerase IV (EC 2.7.7.7)
nrnA
 
Lactobacillus acidophilus NCFM

Gene: LBA0415: 3'-to-5' oligoribonuclease A
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1225: 3'-to-5' oligoribonuclease A
 
Lactobacillus casei ATCC 334

Gene: LSEI_0781: 3'-to-5' oligoribonuclease A
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1488: 3'-to-5' oligoribonuclease A
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0519: 3'-to-5' oligoribonuclease A
 
Lactobacillus helveticus DPC 4571

Gene: lhv_0434: 3'-to-5' oligoribonuclease A
 
Lactobacillus johnsonii NCC 533

Gene: LJ0472: 3'-to-5' oligoribonuclease A
 
Lactobacillus plantarum WCFS1

Gene: lp_2279: 3'-to-5' oligoribonuclease A
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0517: 3'-to-5' oligoribonuclease A
 
Lactobacillus rhamnosus GG

Gene: LGG_00763: 3'-to-5' oligoribonuclease A
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0384: 3'-to-5' oligoribonuclease A
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1585: 3'-to-5' oligoribonuclease A
 
Oenococcus oeni PSU-1

Gene: OEOE_1286: 3'-to-5' oligoribonuclease A
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1265: 3'-to-5' oligoribonuclease A
3'-to-5' oligoribonuclease A
rheB
 
Lactobacillus acidophilus NCFM

Gene: LBA0416: Putative ATP-dependent DNA/RNA helicase
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1224: Putative ATP-dependent DNA/RNA helicase
 
Lactobacillus casei ATCC 334

Gene: LSEI_0782: Putative ATP-dependent DNA/RNA helicase
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1487: Putative ATP-dependent DNA/RNA helicase
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0520: Putative ATP-dependent DNA/RNA helicase
 
Lactobacillus helveticus DPC 4571

Gene: lhv_0435: Putative ATP-dependent DNA/RNA helicase
 
Lactobacillus johnsonii NCC 533

Gene: LJ0473: Putative ATP-dependent DNA/RNA helicase
 
Lactobacillus plantarum WCFS1

Gene: lp_2278: Putative ATP-dependent DNA/RNA helicase
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0518: Putative ATP-dependent DNA/RNA helicase
 
Lactobacillus rhamnosus GG

Gene: LGG_00764: Putative ATP-dependent DNA/RNA helicase
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0385: Putative ATP-dependent DNA/RNA helicase
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1584: Putative ATP-dependent DNA/RNA helicase
 
Oenococcus oeni PSU-1

Gene: OEOE_1285: Putative ATP-dependent DNA/RNA helicase
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1264: Putative ATP-dependent DNA/RNA helicase
Putative ATP-dependent DNA/RNA helicase
 
CRON 7.
lexA
*
Lactobacillus acidophilus NCFM

Site:
position = -80
score = 4.10272
sequence = AAGAACGCCTGTTTGA

Gene: LBA1280: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88)
 
Lactobacillus brevis ATCC 367
*2
Lactobacillus casei ATCC 334

Site:
position = -61
score = 5.02178
sequence = GCAAACGTTCGTTCGC

Gene: LSEI_0730: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88)

Site:
position = -53
score = 4.14189
sequence = TCAAAAGTTTTTTTGT

Gene: LSEI_1968: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88)
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -85
score = 4.06417
sequence = TAGAACGCCCGTTTGC

Gene: LBUL_1265: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88)
*
Lactobacillus fermentum IFO 3956

Site:
position = -79
score = 4.88731
sequence = TCGAACGTACGTTTTA

Gene: LAF_0708: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88)
*
Lactobacillus helveticus DPC 4571

Site:
position = -82
score = 4.78158
sequence = TAGAACATTCGTTTGA

Gene: lhv_1364: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88)
*
Lactobacillus johnsonii NCC 533

Site:
position = -71
score = 4.1388
sequence = AAGAACGCCTGTTTGC

Gene: LJ1508: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88)
*
Lactobacillus plantarum WCFS1

Site:
position = -81
score = 5.00156
sequence = CCGAACATTTGTTTGA

Gene: lp_2063: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88)
*
Lactobacillus reuteri JCM 1112

Site:
position = -71
score = 5.17189
sequence = GCGAACGTACGTTTGA

Gene: LAR_0650: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88)
*
Lactobacillus rhamnosus GG

Site:
position = -60
score = 4.69334
sequence = GCAAACGTCCGTTCGT

Gene: LGG_00717: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88)
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -70
score = 4.7182
sequence = ACGAACACTTGTTTGA

Gene: LSA1275: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88)
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -74
score = 4.57633
sequence = ACGAACGTTAGTTTGA

Gene: LSL_0540: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88)
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -75
score = 5.02424
sequence = ACGAACAAACGTTTGA

Gene: LEUM_1204: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88)
*
Oenococcus oeni PSU-1

Site:
position = -76
score = 4.89856
sequence = ACGAACATGTGTTTGT

Gene: OEOE_0970: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88)
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -68
score = 5.14664
sequence = GCGAACATTTGTTTGA

Gene: PEPE_0870: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88)
SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88)
 
CRON 8.
xerC
 
Lactobacillus acidophilus NCFM

Gene: LBA1145: Site-specific DNA-tyrosine recombinase, XerC
*
Lactobacillus brevis ATCC 367

Site:
position = -112
score = 4.09422
sequence = TAAAACAAATATTTTA

Site:
position = -27
score = 4.74978
sequence = CAGAACATACGTTTGG

Gene: LVIS_0812: Site-specific DNA-tyrosine recombinase, XerC
*
Lactobacillus casei ATCC 334

Site:
position = -26
score = 5.00386
sequence = GAAAACATACGTTCGA

Gene: LSEI_1415: Site-specific DNA-tyrosine recombinase, XerC
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_0947: Site-specific DNA-tyrosine recombinase, XerC
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0940: Site-specific DNA-tyrosine recombinase, XerC
*
Lactobacillus helveticus DPC 4571

Site:
position = -77
score = 4.86205
sequence = TAAAACATTTGTTCGA

Gene: lhv_1253: Site-specific DNA-tyrosine recombinase, XerC
*
Lactobacillus johnsonii NCC 533

Site:
position = -28
score = 4.66372
sequence = ACAAACCTACGTTCGA

Gene: LJ1177: Site-specific DNA-tyrosine recombinase, XerC
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0930: Site-specific DNA-tyrosine recombinase, XerC
*
Lactobacillus rhamnosus GG

Site:
position = -27
score = 5.08433
sequence = GAAAACATATGTTCGA

Gene: LGG_01425: Site-specific DNA-tyrosine recombinase, XerC
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0967: Site-specific DNA-tyrosine recombinase, XerC
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -25
score = 4.52045
sequence = TCAAATGAATGTTCGG

Gene: LSL_1797: Site-specific DNA-tyrosine recombinase, XerC
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
Site-specific DNA-tyrosine recombinase, XerC
 
CRON 9.
parE
 
Lactobacillus acidophilus NCFM

Gene: LBA1122: Topoisomerase IV subunit B (EC 5.99.1.-)
*
Lactobacillus brevis ATCC 367

Site:
position = -70
score = 4.72962
sequence = TTGAACATACGTTCGG

Gene: LVIS_0804: Topoisomerase IV subunit B (EC 5.99.1.-)
 
Lactobacillus casei ATCC 334

Gene: LSEI_1408: Topoisomerase IV subunit B (EC 5.99.1.-)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_0900: Topoisomerase IV subunit B (EC 5.99.1.-)
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0903: Topoisomerase IV subunit B (EC 5.99.1.-)
 
Lactobacillus helveticus DPC 4571

Gene: lhv_1232: Topoisomerase IV subunit B (EC 5.99.1.-)
 
Lactobacillus johnsonii NCC 533

Gene: LJ1170: Topoisomerase IV subunit B (EC 5.99.1.-)
*
Lactobacillus plantarum WCFS1

Site:
position = -185
score = 4.90193
sequence = GCGAACGTGTGTTTGC

Gene: lp_1840: Topoisomerase IV subunit B (EC 5.99.1.-)
*
Lactobacillus reuteri JCM 1112

Site:
position = -45
score = 4.61093
sequence = TCGAACATACGTTTAG

Gene: LAR_0752: Topoisomerase IV subunit B (EC 5.99.1.-)
*
Lactobacillus rhamnosus GG

Site:
position = -179
score = 4.54197
sequence = ACGAACACACATTCGA

Gene: LGG_01419: Topoisomerase IV subunit B (EC 5.99.1.-)
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -113
score = 4.74273
sequence = GCGAACATACATTTGG

Gene: LSA0976: Topoisomerase IV subunit B (EC 5.99.1.-)
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_0871: Topoisomerase IV subunit B (EC 5.99.1.-)
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -36
score = 4.28432
sequence = ACGAACACTGGTTCGT

Gene: LEUM_1364: Topoisomerase IV subunit B (EC 5.99.1.-)
*
Oenococcus oeni PSU-1

Site:
position = -8
score = 4.77837
sequence = ACGAATGAATGTTCGC

Gene: OEOE_1026: Topoisomerase IV subunit B (EC 5.99.1.-)
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_0959: Topoisomerase IV subunit B (EC 5.99.1.-)
Topoisomerase IV subunit B (EC 5.99.1.-)
parC
 
Lactobacillus acidophilus NCFM

Gene: LBA1123: Topoisomerase IV subunit A (EC 5.99.1.-)
 
Lactobacillus brevis ATCC 367

Gene: LVIS_0805: Topoisomerase IV subunit A (EC 5.99.1.-)
 
Lactobacillus casei ATCC 334

Gene: LSEI_1409: Topoisomerase IV subunit A (EC 5.99.1.-)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_0901: Topoisomerase IV subunit A (EC 5.99.1.-)
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0904: Topoisomerase IV subunit A (EC 5.99.1.-)
 
Lactobacillus helveticus DPC 4571

Gene: lhv_1233: Topoisomerase IV subunit A (EC 5.99.1.-)
 
Lactobacillus johnsonii NCC 533

Gene: LJ1171: Topoisomerase IV subunit A (EC 5.99.1.-)
 
Lactobacillus plantarum WCFS1

Gene: lp_1839: Topoisomerase IV subunit A (EC 5.99.1.-)
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0753: Topoisomerase IV subunit A (EC 5.99.1.-)
 
Lactobacillus rhamnosus GG

Gene: LGG_01420: Topoisomerase IV subunit A (EC 5.99.1.-)
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0975: Topoisomerase IV subunit A (EC 5.99.1.-)
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_0872: Topoisomerase IV subunit A (EC 5.99.1.-)
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1363: Topoisomerase IV subunit A (EC 5.99.1.-)
 
Oenococcus oeni PSU-1

Gene: OEOE_1027: Topoisomerase IV subunit A (EC 5.99.1.-)
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_0958: Topoisomerase IV subunit A (EC 5.99.1.-)
Topoisomerase IV subunit A (EC 5.99.1.-)
 
CRON 10.
uvrB
*
Lactobacillus acidophilus NCFM

Site:
position = -87
score = 4.59686
sequence = GCGAAAACACGTTCGT

Gene: LBA0688: Excinuclease ABC, subunit B
*
Lactobacillus brevis ATCC 367

Site:
position = -101
score = 4.88021
sequence = GCGAAAGTATGTTCGG

Gene: LVIS_0648: Excinuclease ABC, subunit B
*
Lactobacillus casei ATCC 334

Site:
position = -127
score = 4.16597
sequence = ACGAAATTTTGTTTGG

Site:
position = -206
score = 5.02529
sequence = GCGAAAGTATGTTCGC

Gene: LSEI_0956: Excinuclease ABC, subunit B
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -64
score = 4.11058
sequence = TAGAATCTATGTTCGG

Gene: LBUL_0549: Excinuclease ABC, subunit B
*
Lactobacillus fermentum IFO 3956

Site:
position = -99
score = 4.73644
sequence = ACGAATAAACGTTCGT

Gene: LAF_0353: Excinuclease ABC, subunit B
*
Lactobacillus helveticus DPC 4571

Site:
position = -86
score = 4.59686
sequence = GCGAAAACACGTTCGT

Gene: lhv_0729: Excinuclease ABC, subunit B
*
Lactobacillus johnsonii NCC 533

Site:
position = -86
score = 5.02529
sequence = GCGAAAATACGTTCGC

Gene: LJ0863: Excinuclease ABC, subunit B
*
Lactobacillus plantarum WCFS1

Site:
position = -146
score = 4.98921
sequence = GCGAAAGTATGTTCGA

Gene: lp_0772: Excinuclease ABC, subunit B
*
Lactobacillus reuteri JCM 1112

Site:
position = -132
score = 4.39476
sequence = ACGAATACATGTTTGG

Gene: LAR_0372: Excinuclease ABC, subunit B
*
Lactobacillus rhamnosus GG

Site:
position = -271
score = 5.02529
sequence = GCGAAAGTATGTTCGC

Gene: LGG_00923: Excinuclease ABC, subunit B
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -190
score = 4.88021
sequence = GCGAAAATACGTTCGG

Gene: LSA0523: Excinuclease ABC, subunit B
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_1175: Excinuclease ABC, subunit B
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -89
score = 4.89442
sequence = TAGAACGTTTGTTCGT

Gene: LEUM_0392: Excinuclease ABC, subunit B
 
Oenococcus oeni PSU-1

Gene: OEOE_0372: Excinuclease ABC, subunit B
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -127
score = 4.88021
sequence = GCGAAAGTATGTTCGG

Gene: PEPE_0448: Excinuclease ABC, subunit B
Excinuclease ABC, subunit B
OEOE_0373
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1

Gene: OEOE_0373: Short-chain alcohol dehydrogenase
 
Pediococcus pentosaceus ATCC 25745
Short-chain alcohol dehydrogenase
uvrA
 
Lactobacillus acidophilus NCFM

Gene: LBA0689: Excinuclease ABC, subunit A
 
Lactobacillus brevis ATCC 367

Gene: LVIS_0649: Excinuclease ABC, subunit A
 
Lactobacillus casei ATCC 334

Gene: LSEI_0957: Excinuclease ABC, subunit A
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_0550: Excinuclease ABC, subunit A
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0354: Excinuclease ABC, subunit A
 
Lactobacillus helveticus DPC 4571

Gene: lhv_0730: Excinuclease ABC, subunit A
 
Lactobacillus johnsonii NCC 533

Gene: LJ0864: Excinuclease ABC, subunit A
 
Lactobacillus plantarum WCFS1

Gene: lp_0773: Excinuclease ABC, subunit A
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0373: Excinuclease ABC, subunit A
 
Lactobacillus rhamnosus GG

Gene: LGG_00924: Excinuclease ABC, subunit A
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0524: Excinuclease ABC, subunit A
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_1174: Excinuclease ABC, subunit A
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0393: Excinuclease ABC, subunit A
*
Oenococcus oeni PSU-1

Site:
position = -50
score = 4.17301
sequence = GGGAACTAATGTTCGC

Gene: OEOE_0374: Excinuclease ABC, subunit A
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_0449: Excinuclease ABC, subunit A
Excinuclease ABC, subunit A
 
CRON 11.
umuC
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367
*
Lactobacillus casei ATCC 334

Site:
position = -40
score = 5.24652
sequence = GCAAACGTATGTTCGT

Gene: LSEI_1049: UV-damage repair protein
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
*
Lactobacillus fermentum IFO 3956

Site:
position = -67
score = 3.94425
sequence = CCGAACACTTGTTCCG

Gene: LAF_1605: UV-damage repair protein
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
*
Lactobacillus plantarum WCFS1

Site:
position = -192
score = 4.90674
sequence = AAGAACATATGTTCTT

Gene: lp_3023: UV-damage repair protein
*
Lactobacillus reuteri JCM 1112

Site:
position = -59
score = 4.8004
sequence = TTGAACATATGTTTGA

Gene: LAR_1238: UV-damage repair protein
*
Lactobacillus rhamnosus GG

Site:
position = -40
score = 5.24652
sequence = GCAAACATACGTTCGT

Gene: LGG_01010: UV-damage repair protein
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -41
score = 5.15525
sequence = AAGAACATATGTTCGT

Gene: PEPE_1243: UV-damage repair protein
UV-damage repair protein
LVIS_2094
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334

Gene: LSEI_1048: Conserved hypothetical protein
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG

Gene: LGG_01009: Conserved hypothetical protein
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1242: Conserved hypothetical protein
Conserved hypothetical protein
lp_3022
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956

Gene: LAF_1606: Conserved hypothetical protein
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_3022: Conserved hypothetical protein
 
Lactobacillus reuteri JCM 1112

Gene: LAR_1237: Conserved hypothetical protein
 
Lactobacillus rhamnosus GG
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
Conserved hypothetical protein
 
CRON 12.
LJ1544
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367
*
Lactobacillus casei ATCC 334

Site:
position = -53
score = 4.34053
sequence = TTGAACACTTGTTCGT

Site:
position = -26
score = 4.99572
sequence = ACAAACAAATGTTCGG

Gene: LSEI_1631: hypothetical protein
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -71
score = 4.35578
sequence = TCGAATACTCGTTCGT

Site:
position = -44
score = 4.35122
sequence = ACAAACAGGCGTTCGA

Gene: LBUL_1313: hypothetical protein
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
*
Lactobacillus johnsonii NCC 533

Site:
position = -64
score = 4.85037
sequence = AAAAACATTTGTTCGT

Site:
position = -36
score = 4.38941
sequence = GCAAACACAAGTTCGG

Gene: LJ1544: hypothetical protein
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112
*
Lactobacillus rhamnosus GG

Site:
position = -53
score = 4.52673
sequence = TTGAACACATGTTCGT

Site:
position = -26
score = 4.91525
sequence = ACAAACAAACGTTCGG

Gene: LGG_01676: hypothetical protein
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -56
score = 4.89442
sequence = TAGAACGTTTGTTCGT

Site:
position = -29
score = 4.99572
sequence = ACAAACAAATGTTCGG

Gene: LSA0683: hypothetical protein
 
Lactobacillus salivarius subsp. salivarius UCC118
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -54
score = 4.72705
sequence = TTGAACATTTGTTCGT

Gene: LEUM_1714: hypothetical protein
*
Oenococcus oeni PSU-1

Site:
position = -44
score = 4.75641
sequence = TCGAACAAGCGTTCGT

Gene: OEOE_1232: hypothetical protein
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -54
score = 4.68826
sequence = AAGAACGCATGTTCGT

Site:
position = -27
score = 5.09887
sequence = ACAAACAAATGTTCGT

Gene: PEPE_0824: hypothetical protein
hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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