Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog AgaR2 - Lactobacillaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: N-acetylgalactosamine utilization
Effector: N-acetylgalactosamine
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Lactobacillus acidophilus NCFM
Lactobacillus brevis ATCC 367
Lactobacillus casei ATCC 334
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus fermentum IFO 3956
Lactobacillus helveticus DPC 4571 2 1
Lactobacillus johnsonii NCC 533 7 2
Lactobacillus plantarum WCFS1
Lactobacillus reuteri JCM 1112
Lactobacillus rhamnosus GG 8 1
Lactobacillus sakei subsp. sakei 23K
Lactobacillus salivarius subsp. salivarius UCC118
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Oenococcus oeni PSU-1
Pediococcus pentosaceus ATCC 25745 8 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
gadF
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533

Gene: LJ0122: Predicted galactosamine disaccharide-specific PTS, EIIA component (EC 2.7.1.69)
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG

Gene: LGG_00340: Predicted galactosamine disaccharide-specific PTS, EIIA component (EC 2.7.1.69)
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1

Gene: OEOE_0382: Predicted galactosamine disaccharide-specific PTS, EIIA component (EC 2.7.1.69)
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -117
score = 5.62187
sequence = AACTGGTACCAACCAGTT

Gene: PEPE_1761: Predicted galactosamine disaccharide-specific PTS, EIIA component (EC 2.7.1.69)
Predicted galactosamine disaccharide-specific PTS, EIIA component (EC 2.7.1.69)
LJ0015
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533

Gene: LJ0015: Conserved hypothetical protein
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1760: Conserved hypothetical protein
Conserved hypothetical protein
gadV
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
*
Lactobacillus johnsonii NCC 533

Site:
position = -97
score = 5.75785
sequence = AAGTGGTTGCAACCAGTT

Gene: LJ0119: Predicted galactosamine disaccharide-specific PTS, EIIB component (EC 2.7.1.69)
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG

Gene: LGG_00337: Predicted galactosamine disaccharide-specific PTS, EIIB component (EC 2.7.1.69)
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1

Gene: OEOE_0379: Predicted galactosamine disaccharide-specific PTS, EIIB component (EC 2.7.1.69)
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1759: Predicted galactosamine disaccharide-specific PTS, EIIB component (EC 2.7.1.69)
Predicted galactosamine disaccharide-specific PTS, EIIB component (EC 2.7.1.69)
gadW
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533

Gene: LJ0120: Predicted galactosamine disaccharide-specific PTS, EIIC component (EC 2.7.1.69)
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG

Gene: LGG_00338: Predicted galactosamine disaccharide-specific PTS, EIIC component (EC 2.7.1.69)
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1

Gene: OEOE_0380: Predicted galactosamine disaccharide-specific PTS, EIIC component (EC 2.7.1.69)
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1758: Predicted galactosamine disaccharide-specific PTS, EIIC component (EC 2.7.1.69)
Predicted galactosamine disaccharide-specific PTS, EIIC component (EC 2.7.1.69)
gadE
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533

Gene: LJ0121: Predicted galactosamine disaccharide-specific PTS, EIID component (EC 2.7.1.69)
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG

Gene: LGG_00339: Predicted galactosamine disaccharide-specific PTS, EIID component (EC 2.7.1.69)
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1

Gene: OEOE_0381: Predicted galactosamine disaccharide-specific PTS, EIID component (EC 2.7.1.69)
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1757: Predicted galactosamine disaccharide-specific PTS, EIID component (EC 2.7.1.69)
Predicted galactosamine disaccharide-specific PTS, EIID component (EC 2.7.1.69)
agaR2
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
*
Lactobacillus helveticus DPC 4571

Site:
position = -85
score = 6.03138
sequence = AACTGGTTATAACCACTT

Site:
position = -31
score = 6.00772
sequence = AAGTGGTACTAACCAGTT

Gene: lhv_0513: N-acetylgalactosamine utilization transcriptional regulator AgaR2, GntR family
*
Lactobacillus johnsonii NCC 533

Site:
position = -40
score = 5.75909
sequence = AGGTGGTACTAACCAGTT

Gene: LJ0116: N-acetylgalactosamine utilization transcriptional regulator AgaR2, GntR family
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112
*
Lactobacillus rhamnosus GG

Site:
position = -30
score = 4.52874
sequence = ATGTGGTTGGTACCACGT

Gene: LGG_00332: N-acetylgalactosamine utilization transcriptional regulator AgaR2, GntR family
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1756: N-acetylgalactosamine utilization transcriptional regulator AgaR2, GntR family
N-acetylgalactosamine utilization transcriptional regulator AgaR2, GntR family
agaS
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533

Gene: LJ0117: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG

Gene: LGG_00333: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1755: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)
Galactosamine-6-phosphate isomerase (EC 5.3.1.-)
agaA
 
Lactobacillus acidophilus NCFM

Gene: LBA0144: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_0171: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571

Gene: lhv_0514: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Lactobacillus johnsonii NCC 533

Gene: LJ0118: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG

Gene: LGG_00334: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1754: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)
N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)
bgaC
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG

Gene: LGG_00336: Beta-galactosidase (EC 3.2.1.23)
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
Beta-galactosidase (EC 3.2.1.23)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD