Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog DVUA0143 - Desulfovibrionales

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator
Biological process: Nitrogen fixation
Effector:
Phylum: Proteobacteria/delta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 22 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Desulfovibrio vulgaris Hildenborough 10 2
Desulfovibrio vulgaris str. Miyazaki F 11 2
Desulfovibrio desulfuricans G20
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Desulfovibrio salexigens DSM 2638 13 2
Desulfovibrio piger ATCC 29098
Desulfovibrio magneticus RS-1 10 3
Desulfomicrobium baculatum DSM 4028 12 3
Desulfohalobium retbaense DSM 5692
Lawsonia intracellularis PHE/MN1-00
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nifH
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -435
score = 4.7845
sequence = CTACAAAAATGTAG

Gene: DVUA0015: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -230
score = 4.24909
sequence = CAACGCATTTGTCG

Site:
position = -212
score = 4.56277
sequence = CGACAAAATGGTCG

Gene: DvMF_2613: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
*
Desulfovibrio salexigens DSM 2638

Site:
position = -182
score = 4.95185
sequence = CTACAATTTTGTAC

Site:
position = -200
score = 4.08356
sequence = CTGCAAAAATGTAG

Gene: Desal_0447: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
 
Desulfovibrio piger ATCC 29098
*
Desulfovibrio magneticus RS-1

Site:
position = -168
score = 4.17482
sequence = CAACAAAAATGTTT

Site:
position = -191
score = 4.35618
sequence = GAACATTTTTGTCG

Site:
position = -204
score = 5.07262
sequence = CGACATTTATGTCG

Gene: DMR_20560: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
*
Desulfomicrobium baculatum DSM 4028

Site:
position = -184
score = 5.25669
sequence = CTACATTTTTGTCT

Gene: Dbac_0834: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
 
Desulfohalobium retbaense DSM 5692
 
Lawsonia intracellularis PHE/MN1-00
Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
glnB-3
 
Desulfovibrio vulgaris Hildenborough

Gene: DVUA0014: nitrogen regulatory protein P-II
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_2614: nitrogen regulatory protein P-II
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_0446: nitrogen regulatory protein P-II
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio magneticus RS-1

Gene: DMR_20550: nitrogen regulatory protein P-II
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0835: nitrogen regulatory protein P-II
 
Desulfohalobium retbaense DSM 5692
 
Lawsonia intracellularis PHE/MN1-00
nitrogen regulatory protein P-II
glnB-2
 
Desulfovibrio vulgaris Hildenborough

Gene: DVUA0013: nitrogen regulatory protein P-II
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_2615: nitrogen regulatory protein P-II
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_0445: nitrogen regulatory protein P-II
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio magneticus RS-1

Gene: DMR_20540: nitrogen regulatory protein P-II
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0836: nitrogen regulatory protein P-II
 
Desulfohalobium retbaense DSM 5692
 
Lawsonia intracellularis PHE/MN1-00
nitrogen regulatory protein P-II
nifD
 
Desulfovibrio vulgaris Hildenborough

Gene: DVUA0012: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_2616: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_0444: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio magneticus RS-1

Gene: DMR_20530: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0837: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
 
Desulfohalobium retbaense DSM 5692
 
Lawsonia intracellularis PHE/MN1-00
Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
nifK
 
Desulfovibrio vulgaris Hildenborough

Gene: DVUA0011: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_2617: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_0443: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio magneticus RS-1

Gene: DMR_20520: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0838: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
 
Desulfohalobium retbaense DSM 5692
 
Lawsonia intracellularis PHE/MN1-00
Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
DvMF_2618
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_2618: Dinitrogenase iron-molybdenum cofactor biosynthesis protein
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_0442: Dinitrogenase iron-molybdenum cofactor biosynthesis protein
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio magneticus RS-1
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0839: Dinitrogenase iron-molybdenum cofactor biosynthesis protein
 
Desulfohalobium retbaense DSM 5692
 
Lawsonia intracellularis PHE/MN1-00
Dinitrogenase iron-molybdenum cofactor biosynthesis protein
DVUA0010
 
Desulfovibrio vulgaris Hildenborough

Gene: DVUA0010: ferredoxin, 2fe-2s
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_2619: ferredoxin, 2fe-2s
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_0441: ferredoxin, 2fe-2s
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio magneticus RS-1

Gene: DMR_20510: ferredoxin, 2fe-2s
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0840: ferredoxin, 2fe-2s
 
Desulfohalobium retbaense DSM 5692
 
Lawsonia intracellularis PHE/MN1-00
ferredoxin, 2fe-2s
Desal_0440
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_0440: GCN5-related N-acetyltransferase
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio magneticus RS-1
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
 
Lawsonia intracellularis PHE/MN1-00
GCN5-related N-acetyltransferase
nifE
 
Desulfovibrio vulgaris Hildenborough

Gene: DVUA0009: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_2620: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_0439: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
 
Desulfovibrio piger ATCC 29098
*
Desulfovibrio magneticus RS-1

Site:
position = -125
score = 4.70253
sequence = CGACAAATTTGTTT

Site:
position = -148
score = 4.78774
sequence = CTACAATTCTGTCG

Gene: DMR_17520: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0841: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
 
Desulfohalobium retbaense DSM 5692
 
Lawsonia intracellularis PHE/MN1-00
Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
nifN
 
Desulfovibrio vulgaris Hildenborough

Gene: DVUA0008: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_2621: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_0438: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio magneticus RS-1

Gene: DMR_17510: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0842: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
 
Desulfohalobium retbaense DSM 5692
 
Lawsonia intracellularis PHE/MN1-00
Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
nifB
 
Desulfovibrio vulgaris Hildenborough

Gene: DVUA0007: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_2622: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_0437: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio magneticus RS-1

Gene: DMR_17500: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0843: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
 
Desulfohalobium retbaense DSM 5692
 
Lawsonia intracellularis PHE/MN1-00
Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
 
CRON 2.
nifV
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -354
score = 4.17139
sequence = CGACGATTCTGTAG

Site:
position = -336
score = 5.25669
sequence = CTACATTTTTGTAG

Gene: DVUA0016: pyruvate carboxyltransferase
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -406
score = 4.5815
sequence = CGACCATTTTGTCG

Site:
position = -388
score = 3.94853
sequence = CGACAAATGCGTTG

Gene: DvMF_2612: pyruvate carboxyltransferase
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
*
Desulfovibrio salexigens DSM 2638

Site:
position = -157
score = 4.26763
sequence = GTACAAAATTGTAG

Site:
position = -139
score = 4.55575
sequence = CTACATTTTTGCAG

Gene: Desal_0448: pyruvate carboxyltransferase
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio magneticus RS-1
*
Desulfomicrobium baculatum DSM 4028

Site:
position = -156
score = 3.97828
sequence = AGACAAAAATGTAG

Gene: Dbac_0833: pyruvate carboxyltransferase
 
Desulfohalobium retbaense DSM 5692
 
Lawsonia intracellularis PHE/MN1-00
pyruvate carboxyltransferase
Dbac_0547
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_2323: hypothetical protein
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_0449: hypothetical protein
 
Desulfovibrio piger ATCC 29098
*
Desulfovibrio magneticus RS-1

Site:
position = -114
score = 4.59272
sequence = CGACGCTTTTGTCG

Site:
position = -93
score = 4.38193
sequence = CCACGATTTTGTCG

Site:
position = -49
score = 4.20115
sequence = CGACAATATTGAAT

Gene: DMR_11080: hypothetical protein
*
Desulfomicrobium baculatum DSM 4028

Site:
position = -120
score = 4.78774
sequence = CCACATTTTTGTCG

Gene: Dbac_0547: hypothetical protein
 
Desulfohalobium retbaense DSM 5692
 
Lawsonia intracellularis PHE/MN1-00
hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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