Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PspF - Desulfovibrionales

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator
Biological process: Phage shock response
Effector: PspA regulatory protein
Phylum: Proteobacteria/delta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Desulfovibrio vulgaris Hildenborough 3 1
Desulfovibrio vulgaris str. Miyazaki F 3 1
Desulfovibrio desulfuricans G20 3 1
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Desulfovibrio salexigens DSM 2638
Desulfovibrio magneticus RS-1 2 1
Desulfovibrio piger ATCC 29098
Lawsonia intracellularis PHE/MN1-00
Desulfomicrobium baculatum DSM 4028 3 1
Desulfohalobium retbaense DSM 5692
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pspA
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -147
score = 4.84355
sequence = TTTGGTGGATTTTACCAGT

Gene: DVU2988: phage shock protein A
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -171
score = 5.32195
sequence = TTTGGTGATTTTCACCAGA

Gene: DvMF_1799: phage shock protein A
*
Desulfovibrio desulfuricans G20

Site:
position = -171
score = 5.22802
sequence = CATGGTTTTTTATGCCATA

Site:
position = -151
score = 4.99877
sequence = TATGGTTTAAATTGCTACT

Site:
position = -131
score = 5.16775
sequence = AATGGTTTTGTATACCACA

Gene: Dde_3226: phage shock protein A
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio salexigens DSM 2638
*
Desulfovibrio magneticus RS-1

Site:
position = -169
score = 5.07387
sequence = CATGGCGATTTTCTCCAGT

Site:
position = -148
score = 5.05959
sequence = TGTGGCGAAAAATACCAGT

Gene: DMR_38330: phage shock protein A
 
Desulfovibrio piger ATCC 29098
 
Lawsonia intracellularis PHE/MN1-00
*
Desulfomicrobium baculatum DSM 4028

Site:
position = -180
score = 4.9226
sequence = TGTGGTTTCCATCACCAAT

Gene: Dbac_1225: phage shock protein A
 
Desulfohalobium retbaense DSM 5692
phage shock protein A
pspB
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU2987: phage shock protein B
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_1800: phage shock protein B
 
Desulfovibrio desulfuricans G20

Gene: Dde_3225: phage shock protein B
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio salexigens DSM 2638
 2
Desulfovibrio magneticus RS-1

Gene: DMR_38320: phage shock protein B

Gene: DMR_38300: phage shock protein B
 
Desulfovibrio piger ATCC 29098
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_1224: phage shock protein B
 
Desulfohalobium retbaense DSM 5692
phage shock protein B
pspC
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU2986: phage shock protein C
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_1801: phage shock protein C
 
Desulfovibrio desulfuricans G20

Gene: Dde_3224: phage shock protein C
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio magneticus RS-1

Gene: DMR_38290: phage shock protein C
 
Desulfovibrio piger ATCC 29098
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_1223: phage shock protein C
 
Desulfohalobium retbaense DSM 5692
phage shock protein C
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD