Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog DVU0569 - Desulfovibrionales

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator
Biological process: Amino acid metabolism
Effector:
Phylum: Proteobacteria/delta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 17 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Desulfomicrobium baculatum DSM 4028 1 1
Desulfohalobium retbaense DSM 5692 1 1
Desulfovibrio desulfuricans G20 1 1
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Desulfovibrio magneticus RS-1 1 1
Desulfovibrio piger ATCC 29098
Desulfovibrio salexigens DSM 2638 1 1
Desulfovibrio vulgaris Hildenborough 1 1
Desulfovibrio vulgaris str. Miyazaki F 1 1
Lawsonia intracellularis PHE/MN1-00
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ald
*
Desulfomicrobium baculatum DSM 4028

Site:
position = -279
score = 4.66165
sequence = TGGAAATATATGTAACCA

Site:
position = -213
score = 5.20895
sequence = TGGAAATATTTAGTTCCA

Gene: Dbac_3071: Alanine dehydrogenase (EC 1.4.1.1)
*
Desulfohalobium retbaense DSM 5692

Site:
position = -344
score = 4.745
sequence = TGGTTCTTTTGCGTACCA

Gene: Dret_1485: Alanine dehydrogenase (EC 1.4.1.1)
*
Desulfovibrio desulfuricans G20

Site:
position = -241
score = 5.4988
sequence = TGGTTTGTTTTTTTACCA

Site:
position = -331
score = 5.14818
sequence = CGGTTTGATTTATGTCCA

Site:
position = -311
score = 5.3621
sequence = TGGTTTGATTTTTGACCA

Gene: Dde_1553: Alanine dehydrogenase (EC 1.4.1.1)
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
*
Desulfovibrio magneticus RS-1

Site:
position = -360
score = 4.32946
sequence = TGGCATGAAATCGGACCG

Site:
position = -341
score = 4.79498
sequence = TGGTCCGTTTTCATGCCA

Site:
position = -274
score = 5.34072
sequence = TGGAATTTTTTCGTTCCA

Gene: DMR_45640: Alanine dehydrogenase (EC 1.4.1.1)
 
Desulfovibrio piger ATCC 29098
*
Desulfovibrio salexigens DSM 2638

Site:
position = -413
score = 4.57027
sequence = TGGTAACATTACCTACCA

Site:
position = -339
score = 4.89207
sequence = TGGAAACATTAGTTACCA

Site:
position = -268
score = 5.18096
sequence = TGGAAACTTTTATTACCA

Gene: Desal_3303: Alanine dehydrogenase (EC 1.4.1.1)
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -303
score = 5.16313
sequence = TGGCATGTTTTAGGACCA

Site:
position = -369
score = 4.79826
sequence = TGGTTGGTTTACATTCCA

Gene: DVU0571: Alanine dehydrogenase (EC 1.4.1.1)
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -287
score = 5.63337
sequence = TGGTCTGATTTATTTCCA

Site:
position = -373
score = 4.95608
sequence = TGGTCTGAAAACTTTCCA

Site:
position = -354
score = 4.74275
sequence = CGGTCTGAAATGTTTCCA

Gene: DvMF_2154: Alanine dehydrogenase (EC 1.4.1.1)
 
Lawsonia intracellularis PHE/MN1-00
Alanine dehydrogenase (EC 1.4.1.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD