Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog AlsR - Enterobacteriales

Properties
Regulator type: Transcription factor
Regulator family: RpiR
Regulation mode: repressor
Biological process: Allose utilization
Effector: D-allose
Phylum: Gammaproteobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 5 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Citrobacter koseri ATCC BAA-895 8 2
Edwardsiella tarda EIB202
Enterobacter sp. 638
Erwinia amylovora ATCC 49946
Erwinia carotovora subsp. atroseptica SCRI1043
Escherichia coli str. K-12 substr. MG1655 7 2
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Photorhabdus luminescens subsp. laumondii TTO1
Proteus mirabilis HI4320
Salmonella typhimurium LT2
Serratia proteamaculans 568
Yersinia pestis KIM
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rpiB
*
Citrobacter koseri ATCC BAA-895

Site:
position = -106
score = 4.4398
sequence = GGTGTGTAGAACAGGCC

Gene: CKO_03782: D-allose-6-phosphate isomerase (EC 5.3.1.-) / Ribose 5-phosphate isomerase B (EC 5.3.1.6)
 
Edwardsiella tarda EIB202
 
Enterobacter sp. 638
 
Erwinia amylovora ATCC 49946
 
Erwinia carotovora subsp. atroseptica SCRI1043
*
Escherichia coli str. K-12 substr. MG1655

Site:
position = -111
score = 5.32319
sequence = ACTCTGTAAAACAGATC

Gene: b4090: D-allose-6-phosphate isomerase (EC 5.3.1.-) / Ribose 5-phosphate isomerase B (EC 5.3.1.6)
 
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2
 
Serratia proteamaculans 568
 
Yersinia pestis KIM
D-allose-6-phosphate isomerase (EC 5.3.1.-) / Ribose 5-phosphate isomerase B (EC 5.3.1.6)
 
CRON 2.
CKO_03783
*
Citrobacter koseri ATCC BAA-895

Site:
position = -56
score = 4.4398
sequence = GGCCTGTTCTACACACC

Gene: CKO_03783: hypothetical protein
 
Edwardsiella tarda EIB202
 
Enterobacter sp. 638
 
Erwinia amylovora ATCC 49946
 
Erwinia carotovora subsp. atroseptica SCRI1043
 
Escherichia coli str. K-12 substr. MG1655
 
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2
 
Serratia proteamaculans 568
 
Yersinia pestis KIM
hypothetical protein
alsR
*
Citrobacter koseri ATCC BAA-895

Site:
position = -1
score = 4.06079
sequence = AATGAGTCAGTCAGAAT

Gene: CKO_03784: Transcriptional regulator of D-allose utilization, RpiR family
 
Edwardsiella tarda EIB202
 
Enterobacter sp. 638
 
Erwinia amylovora ATCC 49946
 
Erwinia carotovora subsp. atroseptica SCRI1043
*
Escherichia coli str. K-12 substr. MG1655

Site:
position = -264
score = 5.32319
sequence = GATCTGTTTTACAGAGT

Gene: b4089: Transcriptional regulator of D-allose utilization, RpiR family
 
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2
 
Serratia proteamaculans 568
 
Yersinia pestis KIM
Transcriptional regulator of D-allose utilization, RpiR family
alsB
 
Citrobacter koseri ATCC BAA-895

Gene: CKO_03785: D-allose ABC transporter, substrate-binding component
 
Edwardsiella tarda EIB202
 
Enterobacter sp. 638
 
Erwinia amylovora ATCC 49946
 
Erwinia carotovora subsp. atroseptica SCRI1043
 
Escherichia coli str. K-12 substr. MG1655

Gene: b4088: D-allose ABC transporter, substrate-binding component
 
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2
 
Serratia proteamaculans 568
 
Yersinia pestis KIM
D-allose ABC transporter, substrate-binding component
alsA
 
Citrobacter koseri ATCC BAA-895

Gene: CKO_03786: D-allose ABC transporter, ATPase component
 
Edwardsiella tarda EIB202
 
Enterobacter sp. 638
 
Erwinia amylovora ATCC 49946
 
Erwinia carotovora subsp. atroseptica SCRI1043
 
Escherichia coli str. K-12 substr. MG1655

Gene: b4087: D-allose ABC transporter, ATPase component
 
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2
 
Serratia proteamaculans 568
 
Yersinia pestis KIM
D-allose ABC transporter, ATPase component
alsC
 
Citrobacter koseri ATCC BAA-895

Gene: CKO_03787: D-allose ABC transporter, permease component
 
Edwardsiella tarda EIB202
 
Enterobacter sp. 638
 
Erwinia amylovora ATCC 49946
 
Erwinia carotovora subsp. atroseptica SCRI1043
 
Escherichia coli str. K-12 substr. MG1655

Gene: b4086: D-allose ABC transporter, permease component
 
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2
 
Serratia proteamaculans 568
 
Yersinia pestis KIM
D-allose ABC transporter, permease component
alsE
 
Citrobacter koseri ATCC BAA-895

Gene: CKO_03788: D-allulose-6-phosphate 3-epimerase (EC 5.1.3.-)
 
Edwardsiella tarda EIB202
 
Enterobacter sp. 638
 
Erwinia amylovora ATCC 49946
 
Erwinia carotovora subsp. atroseptica SCRI1043
 
Escherichia coli str. K-12 substr. MG1655

Gene: b4085: D-allulose-6-phosphate 3-epimerase (EC 5.1.3.-)
 
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2
 
Serratia proteamaculans 568
 
Yersinia pestis KIM
D-allulose-6-phosphate 3-epimerase (EC 5.1.3.-)
alsK
 
Citrobacter koseri ATCC BAA-895

Gene: CKO_03789: D-allose kinase (EC 2.7.1.55)
 
Edwardsiella tarda EIB202
 
Enterobacter sp. 638
 
Erwinia amylovora ATCC 49946
 
Erwinia carotovora subsp. atroseptica SCRI1043
 
Escherichia coli str. K-12 substr. MG1655

Gene: b4084: D-allose kinase (EC 2.7.1.55)
 
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2
 
Serratia proteamaculans 568
 
Yersinia pestis KIM
D-allose kinase (EC 2.7.1.55)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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