Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog CcpB - Lactobacillaceae

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: unknown
Effector:
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 4 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Lactobacillus acidophilus NCFM
Lactobacillus brevis ATCC 367
Lactobacillus casei ATCC 334 2 1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus fermentum IFO 3956
Lactobacillus helveticus DPC 4571
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1 2 1
Lactobacillus reuteri JCM 1112
Lactobacillus rhamnosus GG 2 1
Lactobacillus sakei subsp. sakei 23K 2 1
Lactobacillus salivarius subsp. salivarius UCC118
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Oenococcus oeni PSU-1
Pediococcus pentosaceus ATCC 25745
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ccpB
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334

Gene: LSEI_2269: Sugar utilization transcriptional regulator CcpB, LacI family
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
*
Lactobacillus plantarum WCFS1

Site:
position = -92
score = 4.9868
sequence = CTGGTACCGGTTTCAC

Gene: lp_2602: Sugar utilization transcriptional regulator CcpB, LacI family
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG

Gene: LGG_02273: Sugar utilization transcriptional regulator CcpB, LacI family
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA1554: Sugar utilization transcriptional regulator CcpB, LacI family
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
Sugar utilization transcriptional regulator CcpB, LacI family
ywbB
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367
*
Lactobacillus casei ATCC 334

Site:
position = -259
score = 5.98738
sequence = CTGAAACGCGTTACAG

Gene: LSEI_2268: Predicted sugar phosphate hydrolase, HAD superfamily
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_2601: Predicted sugar phosphate hydrolase, HAD superfamily
 
Lactobacillus reuteri JCM 1112
*
Lactobacillus rhamnosus GG

Site:
position = -240
score = 5.81244
sequence = CTGTAACGCGTTACAC

Gene: LGG_02272: Predicted sugar phosphate hydrolase, HAD superfamily
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -56
score = 5.29465
sequence = CTGGGACGCGTTTCAT

Gene: LSA1553: Predicted sugar phosphate hydrolase, HAD superfamily
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
Predicted sugar phosphate hydrolase, HAD superfamily
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD