Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Rcas_2304 - Chloroflexia

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Amino acid utilization
Effector:
Phylum: Chloroflexi
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Chloroflexus aggregans DSM 9485
Chloroflexus sp. Y-400-fl
Herpetosiphon aurantiacus ATCC 23779
Roseiflexus castenholzii DSM 13941 3 1
Roseiflexus sp. RS-1 3 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
Rcas_2304
 
Chloroflexus aggregans DSM 9485
 
Chloroflexus sp. Y-400-fl
 
Herpetosiphon aurantiacus ATCC 23779
*
Roseiflexus castenholzii DSM 13941

Site:
position = -71
score = 6.6239
sequence = AGAAATTATAAAAATTTCC

Gene: Rcas_2304: Transcriptional regulator, GntR family
*
Roseiflexus sp. RS-1

Site:
position = -228
score = 6.43059
sequence = AGAAATTATAAAAATCTCC

Gene: RoseRS_1545: Transcriptional regulator, GntR family
Transcriptional regulator, GntR family
Rcas_2303
 
Chloroflexus aggregans DSM 9485
 
Chloroflexus sp. Y-400-fl
 
Herpetosiphon aurantiacus ATCC 23779
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_2303: Putative branched-chain amino acid transporter substrate-binding protein
 
Roseiflexus sp. RS-1

Gene: RoseRS_1544: Putative branched-chain amino acid transporter substrate-binding protein
Putative branched-chain amino acid transporter substrate-binding protein
Rcas_2302
 
Chloroflexus aggregans DSM 9485
 
Chloroflexus sp. Y-400-fl
 
Herpetosiphon aurantiacus ATCC 23779
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_2302: High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)
 
Roseiflexus sp. RS-1

Gene: RoseRS_1543: High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)
High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD