Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Glycine - Burkholderia

Properties
Regulator type: RNA regulatory element
Name: Glycine
RFAM: RF00504
Regulation mode:
Biological process: Glycine metabolism
Effector: Glycine
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Burkholderia pseudomallei K96243 2 1
Burkholderia mallei ATCC 23344 5 1
Burkholderia sp. 383 5 1
Burkholderia cepacia AMMD 5 1
Burkholderia vietnamiensis G4 6 2
Burkholderia glumae BGR1 5 1
Burkholderia xenovorans LB400 7 3
Burkholderia phymatum STM815 3 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
dadA
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383
 
Burkholderia cepacia AMMD
*
Burkholderia vietnamiensis G4

Site:
position = -143
score = 44.74
sequence = ATCTGGAGAGAGGCG...

Site:
position = -242
score = 68.56
sequence = GAAACAACACGGGAG...

Gene: Bcep1808_6673: D-amino acid dehydrogenase small subunit (EC 1.4.99.1)
 
Burkholderia glumae BGR1
*2
Burkholderia xenovorans LB400

Site:
position = -139
score = 50.87
sequence = CAGGACAATCTGGAG...

Site:
position = -228
score = 48.75
sequence = TGAATCGCGCGGAAG...

Gene: Bxe_C0404: D-amino acid dehydrogenase small subunit (EC 1.4.99.1)

Site:
position = -276
score = 62.89
sequence = AATGCAGCGCGGGAG...

Site:
position = -181
score = 35.12
sequence = ATCTGGAGAGCGGCG...

Gene: Bxe_B1348: D-amino acid dehydrogenase small subunit (EC 1.4.99.1)
 
Burkholderia phymatum STM815
D-amino acid dehydrogenase small subunit (EC 1.4.99.1)
 
CRON 2.
gcvT
*
Burkholderia pseudomallei K96243

Site:
position = -233
score = 29.75
sequence = TTTCGCACTCTGGAG...

Site:
position = -375
score = 37.49
sequence = CGCACGCGTCGGGAG...

Gene: BPSL3360: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Burkholderia mallei ATCC 23344

Site:
position = -377
score = 37.49
sequence = TCCGCACGCGTCGGG...

Site:
position = -235
score = 29.75
sequence = TTTTTCGCACTCTGG...

Gene: BMA2994.1: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Burkholderia sp. 383

Site:
position = -356
score = 41.67
sequence = CCCGCACGCGTCGGG...

Gene: Bcep18194_A3325: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Burkholderia cepacia AMMD

Site:
position = -355
score = 35.09
sequence = CCCGCACGCGTCGGG...

Site:
position = -219
score = 29.59
sequence = CTCCCCGCACTCTGG...

Gene: Bamb_0133: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Burkholderia vietnamiensis G4

Site:
position = -355
score = 38.51
sequence = CCCGCACGCGTCGGG...

Gene: Bcep1808_0151: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Burkholderia glumae BGR1

Site:
position = -216
score = 30.35
sequence = GAGTTCGGACTCTGG...

Site:
position = -352
score = 43.31
sequence = CCGGCACGCGTCGGG...

Gene: bglu_1g01030: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Burkholderia xenovorans LB400

Site:
position = -195
score = 37.85
sequence = TTTCGCACTCTGGAG...

Site:
position = -330
score = 38.73
sequence = CGTACGCGTCGGGAG...

Gene: Bxe_A0056: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Burkholderia phymatum STM815

Site:
position = -221
score = 33.14
sequence = TTTCGCACTCTGGAG...

Site:
position = -380
score = 44.29
sequence = CGCACGCGTCGGGAG...

Gene: Bphy_3003: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
gcvH
 
Burkholderia pseudomallei K96243

Gene: BPSL3361: Glycine cleavage system H protein
 
Burkholderia mallei ATCC 23344

Gene: BMA2994: Glycine cleavage system H protein
 
Burkholderia sp. 383

Gene: Bcep18194_A3324: Glycine cleavage system H protein
 
Burkholderia cepacia AMMD

Gene: Bamb_0132: Glycine cleavage system H protein
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_0150: Glycine cleavage system H protein
 
Burkholderia glumae BGR1

Gene: bglu_1g01020: Glycine cleavage system H protein
 
Burkholderia xenovorans LB400

Gene: Bxe_A0055: Glycine cleavage system H protein
 
Burkholderia phymatum STM815

Gene: Bphy_3004: Glycine cleavage system H protein
Glycine cleavage system H protein
gcvP
 
Burkholderia pseudomallei K96243

Gene: BPSL3362: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Burkholderia mallei ATCC 23344

Gene: BMA2993: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Burkholderia sp. 383

Gene: Bcep18194_A3323: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Burkholderia cepacia AMMD

Gene: Bamb_0131: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_0149: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Burkholderia glumae BGR1

Gene: bglu_1g01010: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Burkholderia xenovorans LB400

Gene: Bxe_A0054: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Burkholderia phymatum STM815

Gene: Bphy_3005: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
BPSL3363
 
Burkholderia pseudomallei K96243

Gene: BPSL3363: hypothetical protein
 
Burkholderia mallei ATCC 23344

Gene: BMA2992: hypothetical protein
 
Burkholderia sp. 383

Gene: Bcep18194_A3322: hypothetical protein
 
Burkholderia cepacia AMMD

Gene: Bamb_0130: hypothetical protein
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_0148: hypothetical protein
 
Burkholderia glumae BGR1

Gene: bglu_1g01000: hypothetical protein
 
Burkholderia xenovorans LB400

Gene: Bxe_A0053: hypothetical protein
 
Burkholderia phymatum STM815

Gene: Bphy_3014: hypothetical protein
hypothetical protein
sdaA
 
Burkholderia pseudomallei K96243

Gene: BPSL3364: L-serine dehydratase (EC 4.3.1.17)
 
Burkholderia mallei ATCC 23344

Gene: BMA2991: L-serine dehydratase (EC 4.3.1.17)
 
Burkholderia sp. 383

Gene: Bcep18194_A3321: L-serine dehydratase (EC 4.3.1.17)
 
Burkholderia cepacia AMMD

Gene: Bamb_0129: L-serine dehydratase (EC 4.3.1.17)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_0147: L-serine dehydratase (EC 4.3.1.17)
 
Burkholderia glumae BGR1

Gene: bglu_1g00990: L-serine dehydratase (EC 4.3.1.17)
 
Burkholderia xenovorans LB400

Gene: Bxe_A0052: L-serine dehydratase (EC 4.3.1.17)
 
Burkholderia phymatum STM815

Gene: Bphy_3015: L-serine dehydratase (EC 4.3.1.17)
L-serine dehydratase (EC 4.3.1.17)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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