Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Glycine - Caulobacterales

Properties
Regulator type: RNA regulatory element
Name: Glycine
RFAM: RF00504
Regulation mode:
Biological process: Glycine metabolism
Effector: Glycine
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Caulobacter crescentus CB15 5 2
Caulobacter segnis ATCC 21756 4 1
Caulobacter sp. K31 7 2
Phenylobacterium zucineum HLK1 4 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
omp
*
Caulobacter crescentus CB15

Site:
position = -377
score = 53.15
sequence = GACGTTGAACGCTGG...

Site:
position = -462
score = 52.19
sequence = AAGGCCTCTCGCGGG...

Gene: CC3436: TonB-dependent receptor
 
Caulobacter segnis ATCC 21756

Gene: Cseg_0829: TonB-dependent receptor
*
Caulobacter sp. K31

Site:
position = -415
score = 45.45
sequence = GCGTCGAAACGCTGG...

Gene: Caul_2543: TonB-dependent receptor
 
Phenylobacterium zucineum HLK1
TonB-dependent receptor
COG2355
 
Caulobacter crescentus CB15
 
Caulobacter segnis ATCC 21756
 
Caulobacter sp. K31

Gene: Caul_2542: Dipeptidase
 
Phenylobacterium zucineum HLK1
Dipeptidase
 
CRON 2.
gcvT
*
Caulobacter crescentus CB15

Site:
position = -260
score = 62.81
sequence = CTCGACCCTCGCGGG...

Site:
position = -165
score = 30.61
sequence = ACGCTGGAAAGCAGT...

Gene: CC3355: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Caulobacter segnis ATCC 21756

Site:
position = -145
score = 34.38
sequence = GCTGGAAAGAGGCTT...

Site:
position = -240
score = 61.31
sequence = TGACCCTCGCGGGAG...

Gene: Cseg_0335: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Caulobacter sp. K31

Site:
position = -157
score = 52.5
sequence = GTTTAGGAACGCTGG...

Site:
position = -245
score = 50.41
sequence = CTCGACCCACGCGGG...

Gene: Caul_4387: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Phenylobacterium zucineum HLK1

Site:
position = -173
score = 40.25
sequence = GCTGATGAACGCTGG...

Site:
position = -271
score = 42.36
sequence = GCCGACTCTCGCGGG...

Gene: PHZ_c0592: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
gcvH
 
Caulobacter crescentus CB15

Gene: CC3354: Glycine cleavage system H protein
 
Caulobacter segnis ATCC 21756

Gene: Cseg_0336: Glycine cleavage system H protein
 
Caulobacter sp. K31

Gene: Caul_4386: Glycine cleavage system H protein
 
Phenylobacterium zucineum HLK1

Gene: PHZ_c0591: Glycine cleavage system H protein
Glycine cleavage system H protein
Caul_4385
 
Caulobacter crescentus CB15
 
Caulobacter segnis ATCC 21756
 
Caulobacter sp. K31

Gene: Caul_4385: hypothetical protein
 
Phenylobacterium zucineum HLK1
hypothetical protein
gcvP
 2
Caulobacter crescentus CB15

Gene: CC3353: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)

Gene: CC3352: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
 2
Caulobacter segnis ATCC 21756

Gene: Cseg_0337: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)

Gene: Cseg_0338: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
 2
Caulobacter sp. K31

Gene: Caul_4384: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)

Gene: Caul_4383: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
 2
Phenylobacterium zucineum HLK1

Gene: PHZ_c0589: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)

Gene: PHZ_c0590: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD