Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Glycine - Rhodobacterales

Properties
Regulator type: RNA regulatory element
Name: Glycine
RFAM: RF00504
Regulation mode:
Biological process: Glycine metabolism
Effector: Glycine
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Rhodobacter sphaeroides 2.4.1 3 1
Paracoccus denitrificans PD1222 4 2
Jannaschia sp. CCS1 3 1
Rhodobacterales bacterium HTCC2654 5 1
Oceanicola granulosus HTCC2516 1 1
Loktanella vestfoldensis SKA53 1 1
Oceanicola batsensis HTCC2597 5 1
Roseovarius nubinhibens ISM 3 1
Roseovarius sp. 217 3 1
Sulfitobacter sp. EE-36 3 1
Silicibacter TM1040 3 1
Silicibacter pomeroyi DSS-3
Roseobacter sp. MED193 3 2
Hyphomonas neptunium ATCC 15444 4 1
Oceanicaulis alexandrii HTCC2633 4 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
gcvT
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -141
score = 35.39
sequence = TCGAAGACTCTGGAG...

Site:
position = -229
score = 48.94
sequence = GCCACAGGATCGGGA...

Gene: RSP_2193: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Paracoccus denitrificans PD1222

Site:
position = -223
score = 57.57
sequence = AGGTCGGAAATCGGG...

Site:
position = -130
score = 23.21
sequence = GCTCTGGAGAGAGGC...

Gene: Pden_2348: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Jannaschia sp. CCS1

Site:
position = -148
score = 43.93
sequence = GACATAACTCTGGAG...

Site:
position = -250
score = 41.34
sequence = CGCAACCGTAGGGAG...

Gene: Jann_3620: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*2
Rhodobacterales bacterium HTCC2654

Site:
position = -144
score = 44.05
sequence = ACGACAGCACTCTGG...

Site:
position = -240
score = 39.12
sequence = CCGCATCCACGTTGG...

Gene: RB2654_18583: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)

Gene: RB2654_02149: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
 
Oceanicola granulosus HTCC2516

Gene: OG2516_14955: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
 
Loktanella vestfoldensis SKA53
*
Oceanicola batsensis HTCC2597

Site:
position = -127
score = 33.36
sequence = TCTGGAGAGTGGCGC...

Site:
position = -219
score = 38.46
sequence = ACATCGGACAGGGAG...

Gene: OB2597_14831: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Roseovarius nubinhibens ISM

Site:
position = -173
score = 42.16
sequence = ATCGAGGAACTCTGG...

Site:
position = -257
score = 49.63
sequence = AGATATCGAAACGGG...

Gene: ISM_05735: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Roseovarius sp. 217

Site:
position = -268
score = 43.69
sequence = AGATCGGATAGGGAG...

Site:
position = -185
score = 41.68
sequence = CACGGAACTCTGGAG...

Gene: ROS217_16241: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Sulfitobacter sp. EE-36

Site:
position = -154
score = 48.73
sequence = CTAACAACTCTGGAG...

Site:
position = -239
score = 45.19
sequence = ACACCGTTACGGGAG...

Gene: EE36_09003: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Silicibacter TM1040

Site:
position = -191
score = 47.98
sequence = GCGTAACTACTCTGG...

Site:
position = -293
score = 42.56
sequence = GCCGCAGCACATGGG...

Gene: TM1040_2393: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
 
Silicibacter pomeroyi DSS-3

Gene: SPOA0057: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
 
Roseobacter sp. MED193

Gene: MED193_15002: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Hyphomonas neptunium ATCC 15444

Site:
position = -150
score = 50.43
sequence = ATCAACACGCTGGAA...

Site:
position = -238
score = 60.61
sequence = ATTCTCTTCCGGGAG...

Gene: HNE_2719: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
*
Oceanicaulis alexandrii HTCC2633

Site:
position = -177
score = 42.23
sequence = GACCTAACGCTGGAA...

Site:
position = -266
score = 57.35
sequence = GGTCACTTGCGGGAG...

Gene: OA2633_14096: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
gcvH
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2194: Glycine cleavage system H protein
 
Paracoccus denitrificans PD1222

Gene: Pden_2347: Glycine cleavage system H protein
 
Jannaschia sp. CCS1

Gene: Jann_3621: Glycine cleavage system H protein
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_18578: Glycine cleavage system H protein
 
Oceanicola granulosus HTCC2516

Gene: OG2516_14950: Glycine cleavage system H protein
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597

Gene: OB2597_14836: Glycine cleavage system H protein
 
Roseovarius nubinhibens ISM

Gene: ISM_05730: Glycine cleavage system H protein
 
Roseovarius sp. 217

Gene: ROS217_16246: Glycine cleavage system H protein
 
Sulfitobacter sp. EE-36

Gene: EE36_09008: Glycine cleavage system H protein
 
Silicibacter TM1040

Gene: TM1040_2392: Glycine cleavage system H protein
 2
Silicibacter pomeroyi DSS-3

Gene: SPOA0058: Glycine cleavage system H protein

Gene: SPO0878: Glycine cleavage system H protein
*2
Roseobacter sp. MED193

Gene: MED193_15007: Glycine cleavage system H protein

Site:
position = -348
score = 32.74
sequence = CCCTGTGTATATGGG...

Site:
position = -235
score = 42.23
sequence = CACGAAAGACTCTGG...

Gene: MED193_09370: Glycine cleavage system H protein
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_2720: Glycine cleavage system H protein
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_14101: Glycine cleavage system H protein
Glycine cleavage system H protein
RB2654_18573
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_18573: Uncharacterized conserved protein
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597

Gene: OB2597_14846: Uncharacterized conserved protein
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Uncharacterized conserved protein
RB2654_18568
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_18568: Lactoylglutathione lyase and related lyases
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Lactoylglutathione lyase and related lyases
gcvP
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2195: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Paracoccus denitrificans PD1222

Gene: Pden_2346: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Jannaschia sp. CCS1

Gene: Jann_3622: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_18563: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Oceanicola granulosus HTCC2516

Gene: OG2516_14945: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597

Gene: OB2597_14851: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Roseovarius nubinhibens ISM

Gene: ISM_05725: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Roseovarius sp. 217

Gene: ROS217_16251: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Sulfitobacter sp. EE-36

Gene: EE36_09013: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Silicibacter TM1040

Gene: TM1040_2391: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 
Silicibacter pomeroyi DSS-3

Gene: SPOA0059: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 2
Roseobacter sp. MED193

Gene: MED193_15012: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)

Gene: MED193_09365: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 2
Hyphomonas neptunium ATCC 15444

Gene: HNE_2722: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)

Gene: HNE_2721: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
 2
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_14106: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)

Gene: OA2633_14111: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
OB2597_14841
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597

Gene: OB2597_14841: glycine dehydrogenase
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
glycine dehydrogenase
 
CRON 2.
dadA
 
Rhodobacter sphaeroides 2.4.1
*
Paracoccus denitrificans PD1222

Site:
position = -211
score = 48.39
sequence = ACAGGAGAGTCGGGT...

Site:
position = -141
score = 64.27
sequence = GGACCGCCACTCTGG...

Gene: Pden_0183: D-amino acid dehydrogenase small subunit (EC 1.4.99.1)
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
*
Oceanicola granulosus HTCC2516

Site:
position = -206
score = 40.09
sequence = CGGGAGAGCGCGGAC...

Site:
position = -131
score = 48.53
sequence = CGCAACACTCCGAAG...

Gene: OG2516_12556: D-amino acid dehydrogenase small subunit (EC 1.4.99.1)
*
Loktanella vestfoldensis SKA53

Site:
position = -192
score = 56.86
sequence = CACACGCCATCCGGG...

Site:
position = -110
score = 55.48
sequence = GGTGCAACACGCCGA...

Gene: SKA53_10389: D-amino acid dehydrogenase small subunit (EC 1.4.99.1)
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
*
Roseobacter sp. MED193

Site:
position = -187
score = 55.37
sequence = CCAAGCTGTCACAGG...

Gene: MED193_00175: D-amino acid dehydrogenase small subunit (EC 1.4.99.1)
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
D-amino acid dehydrogenase small subunit (EC 1.4.99.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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