Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog SAM_alpha - Rhodobacterales

Properties
Regulator type: RNA regulatory element
Name: SAM_alpha
RFAM: RF00521
Regulation mode:
Biological process: Methionine biosynthesis
Effector: S-adenosylmethionine
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Rhodobacter sphaeroides 2.4.1 1 1
Paracoccus denitrificans PD1222
Jannaschia sp. CCS1 1 1
Rhodobacterales bacterium HTCC2654 1 1
Oceanicola granulosus HTCC2516 1 1
Loktanella vestfoldensis SKA53 1 1
Oceanicola batsensis HTCC2597 1 1
Roseovarius nubinhibens ISM 1 1
Roseovarius sp. 217 1 1
Sulfitobacter sp. EE-36 1 1
Silicibacter TM1040 1 1
Silicibacter pomeroyi DSS-3 1 1
Roseobacter sp. MED193 1 1
Hyphomonas neptunium ATCC 15444 1 1
Oceanicaulis alexandrii HTCC2633 3 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
hom
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0403: Homoserine dehydrogenase (EC 1.1.1.3)
 
Paracoccus denitrificans PD1222

Gene: Pden_3678: Homoserine dehydrogenase (EC 1.1.1.3)
 
Jannaschia sp. CCS1

Gene: Jann_2998: Homoserine dehydrogenase (EC 1.1.1.3)
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_21303: Homoserine dehydrogenase (EC 1.1.1.3)
 
Oceanicola granulosus HTCC2516

Gene: OG2516_06317: Homoserine dehydrogenase (EC 1.1.1.3)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_01871: Homoserine dehydrogenase (EC 1.1.1.3)
 
Oceanicola batsensis HTCC2597

Gene: OB2597_00930: Homoserine dehydrogenase (EC 1.1.1.3)
 
Roseovarius nubinhibens ISM

Gene: ISM_12920: Homoserine dehydrogenase (EC 1.1.1.3)
 
Roseovarius sp. 217

Gene: ROS217_17087: Homoserine dehydrogenase (EC 1.1.1.3)
 
Sulfitobacter sp. EE-36

Gene: EE36_12348: Homoserine dehydrogenase (EC 1.1.1.3)
 
Silicibacter TM1040

Gene: TM1040_2164: Homoserine dehydrogenase (EC 1.1.1.3)
 
Silicibacter pomeroyi DSS-3

Gene: SPO1734: Homoserine dehydrogenase (EC 1.1.1.3)
 
Roseobacter sp. MED193

Gene: MED193_08628: Homoserine dehydrogenase (EC 1.1.1.3)
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_2310: Homoserine dehydrogenase (EC 1.1.1.3)
*
Oceanicaulis alexandrii HTCC2633

Site:
position = -185
score = 21.71
sequence = TATCCAGATTTGCGC...

Gene: OA2633_08279: Homoserine dehydrogenase (EC 1.1.1.3)
Homoserine dehydrogenase (EC 1.1.1.3)
metX2
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_08274: Homoserine O-acetyltransferase (EC 2.3.1.31)
Homoserine O-acetyltransferase (EC 2.3.1.31)
metB
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_5069: Cystathionine gamma-synthase (EC 2.5.1.48)
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_08269: Cystathionine gamma-synthase (EC 2.5.1.48)
Cystathionine gamma-synthase (EC 2.5.1.48)
 
CRON 2.
metA
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0010: Homoserine O-succinyltransferase (EC 2.3.1.46)
 
Paracoccus denitrificans PD1222

Gene: Pden_4499: Homoserine O-succinyltransferase (EC 2.3.1.46)
 
Jannaschia sp. CCS1

Gene: Jann_2351: Homoserine O-succinyltransferase (EC 2.3.1.46)
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_03524: Homoserine O-succinyltransferase (EC 2.3.1.46)
 
Oceanicola granulosus HTCC2516

Gene: OG2516_03103: Homoserine O-succinyltransferase (EC 2.3.1.46)
 
Loktanella vestfoldensis SKA53

Gene: SKA53_04518: Homoserine O-succinyltransferase (EC 2.3.1.46)
 
Oceanicola batsensis HTCC2597

Gene: OB2597_01912: Homoserine O-succinyltransferase (EC 2.3.1.46)
 
Roseovarius nubinhibens ISM

Gene: ISM_16275: Homoserine O-succinyltransferase (EC 2.3.1.46)
 
Roseovarius sp. 217

Gene: ROS217_18627: Homoserine O-succinyltransferase (EC 2.3.1.46)
 
Sulfitobacter sp. EE-36

Gene: EE36_14917: Homoserine O-succinyltransferase (EC 2.3.1.46)
 
Silicibacter TM1040

Gene: TM1040_1379: Homoserine O-succinyltransferase (EC 2.3.1.46)
 2
Silicibacter pomeroyi DSS-3

Gene: SPO3045: Homoserine O-succinyltransferase (EC 2.3.1.46)

Gene: SPO1729: Homoserine O-succinyltransferase (EC 2.3.1.46)
 
Roseobacter sp. MED193

Gene: MED193_04721: Homoserine O-succinyltransferase (EC 2.3.1.46)
*
Hyphomonas neptunium ATCC 15444

Site:
position = -162
score = 82.3
sequence = AATCCTCGTCCGTGG...

Gene: HNE_3283: Homoserine O-succinyltransferase (EC 2.3.1.46)
 
Oceanicaulis alexandrii HTCC2633
Homoserine O-succinyltransferase (EC 2.3.1.46)
 
CRON 3.
metY
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -91
score = 58.98
sequence = GCAAAAGCCGTGGTG...

Gene: RSP_1851: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
 
Paracoccus denitrificans PD1222

Gene: Pden_4298: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Jannaschia sp. CCS1

Site:
position = -148
score = 62.22
sequence = CCAAGGGCCGTGGCG...

Gene: Jann_1854: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Rhodobacterales bacterium HTCC2654

Site:
position = -120
score = 59.55
sequence = GCGATTGCCGTGGCG...

Gene: RB2654_19698: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Oceanicola granulosus HTCC2516

Site:
position = -127
score = 61.44
sequence = CAGCGCGCATCGTGG...

Gene: OG2516_07445: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Loktanella vestfoldensis SKA53

Site:
position = -132
score = 57.68
sequence = CCAGACGCCGTGGTG...

Gene: SKA53_02111: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Oceanicola batsensis HTCC2597

Site:
position = -150
score = 41.99
sequence = AGACAGCGCGCGTGG...

Gene: OB2597_07085: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Roseovarius nubinhibens ISM

Site:
position = -133
score = 51.37
sequence = ATCCACATCGTGGCG...

Gene: ISM_06080: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Roseovarius sp. 217

Site:
position = -134
score = 58.65
sequence = AATGCGCGACTGTGG...

Gene: ROS217_17025: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Sulfitobacter sp. EE-36

Site:
position = -147
score = 24.58
sequence = ACGTGGCGATTTGAT...

Gene: EE36_17182: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Silicibacter TM1040

Site:
position = -157
score = 61.56
sequence = ATCAAGACCCCGTGG...

Gene: TM1040_1938: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*2
Silicibacter pomeroyi DSS-3

Gene: SPO0413: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)

Site:
position = -144
score = 52.14
sequence = AGGAACCACGTGGCG...

Gene: SPO1351: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
*
Roseobacter sp. MED193

Site:
position = -135
score = 58.86
sequence = ATCAACACCGTGGCG...

Gene: MED193_20939: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_2672: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
 
Oceanicaulis alexandrii HTCC2633
O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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